Integrating pathways of Parkinson's disease in a molecular interaction map KA Fujita, M Ostaszewski, Y Matsuoka, S Ghosh, E Glaab, C Trefois, ... Molecular neurobiology 49, 88-102, 2014 | 267 | 2014 |
Characterization of differentiated SH-SY5Y as neuronal screening model reveals increased oxidative vulnerability JI Forster, S Köglsberger, C Trefois, O Boyd, AS Baumuratov, L Buck, ... Journal of biomolecular screening 21 (5), 496-509, 2016 | 220 | 2016 |
Systems genomics evaluation of the SH-SY5Y neuroblastoma cell line as a model for Parkinson’s disease A Krishna, M Biryukov, C Trefois, P Antony, R Hussong, J Lin, ... BMC genomics 15 (1), 1-21, 2014 | 190 | 2014 |
PredictProtein-predicting protein structure and function for 29 years M Bernhofer, C Dallago, T Karl, V Satagopam, M Heinzinger, M Littmann, ... Nucleic acids research 49 (W1), W535-W540, 2021 | 169 | 2021 |
Critical transitions in chronic disease: transferring concepts from ecology to systems medicine C Trefois, PMA Antony, J Goncalves, A Skupin, R Balling Current Opinion in Biotechnology 34, 48-55, 2015 | 107 | 2015 |
Light microscopy applications in systems biology: opportunities and challenges PM Antony, C Trefois, A Stojanovic, AS Baumuratov, K Kozak Cell Communication and Signaling 11 (1), 24, 2013 | 63 | 2013 |
Model-based assessment of mammalian cell metabolic functionalities using omics data A Richelle, BP Kellman, AT Wenzel, AWT Chiang, T Reagan, ... Cell reports methods 1 (3), 2021 | 30* | 2021 |
Efficient access control for wireless sensor data A Sorniotti, R Molva, L Gomez, C Trefois, A Laube, P Scaglioso International Journal of Wireless Information Networks 16, 165-174, 2009 | 24 | 2009 |
Platelet mitochondrial membrane potential in Parkinson's disease P Antony, O Boyd, C Trefois, W Ammerlaan, M Ostaszewski, ... Annals of clinical and translational neurology 2 (1), 67-73, 2015 | 15 | 2015 |
GigaSOM. jl: High-performance clustering and visualization of huge cytometry datasets M Kratochvíl, O Hunewald, L Heirendt, V Verissimo, J Vondrášek, ... GigaScience 9 (11), giaa127, 2020 | 9 | 2020 |
The need for standardisation in life science research-an approach to excellence and trust. S Hollmann, A Kremer, Š Baebler, C Trefois, K Gruden, WR Rudnicki, ... F1000Research 9, 2020 | 8 | 2020 |
Interrogating the effect of enzyme kinetics on metabolism using differentiable constraint-based models M Besancon, M Kratochvíl, CAF Kuate, C Trefois, W Gu, O Ebenhöh Metabolic engineering 74, 72-82, 2022 | 7 | 2022 |
COBREXA. jl: constraint-based reconstruction and exascale analysis M Kratochvíl, L Heirendt, SE Wilken, T Pusa, S Arreckx, A Noronha, ... Bioinformatics 38 (4), 1171-1172, 2022 | 6 | 2022 |
DAISY: A Data Information System for accountability under the General Data Protection Regulation R Becker, P Alper, V Groues, S Munoz, Y Jarosz, J Lebioda, K Rege, ... GigaScience 8 (12), giz140, 2019 | 6 | 2019 |
Automated nuclei clump splitting by combining local concavity orientation and graph partitioning S Samsi, C Trefois, PMA Antony, A Skupin IEEE-EMBS International Conference on Biomedical and Health Informatics (BHI …, 2014 | 4 | 2014 |
Encryption-based access control for building management L Gomez, A Laube, V Ribiere, A Sorniotti, C Trefois, M Valente, ... the proceedings of the Fifth Annual International Conference on Mobile and …, 2008 | 4 | 2008 |
Provenance-Enabled Stewardship of Human Data in the GDPR Era P Alper, R Becker, V Satagopam, C Trefois, V Grouès, J Lebioda, ... International Provenance and Annotation Workshop, 266-269, 2018 | 3 | 2018 |
Fractalis: a scalable open-source service for platform-independent interactive visual analysis of biomedical data S Herzinger, V Grouès, W Gu, V Satagopam, P Banda, C Trefois, ... GigaScience 7 (9), giy109, 2018 | 2 | 2018 |
Evaluation of Cell Line Suitability for Disease Specific Perturbation Experiments M Biryukov, P Antony, A Krishna, P May, C Trefois Data Science, Learning by Latent Structures, and Knowledge Discovery, 297-307, 2015 | 2 | 2015 |
ARTENOLIS: Automated Reproducibility and Testing Environment for Licensed Software L Heirendt, S Arreckx, C Trefois, Y Yarosz, M Vyas, VP Satagopam, ... arXiv preprint arXiv:1712.05236, 2017 | 1 | 2017 |