Petra Catalina Schwalie
Petra Catalina Schwalie
Bioinformatics Scientist, Pharma Research and Early Development (pRED) - Roche
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Cited by
Cited by
Five-vertebrate ChIP-seq reveals the evolutionary dynamics of transcription factor binding
D Schmidt, MD Wilson, B Ballester, PC Schwalie, GD Brown, A Marshall, ...
Science 328 (5981), 1036-1040, 2010
Insights into hominid evolution from the gorilla genome sequence
A Scally, JY Dutheil, LDW Hillier, GE Jordan, I Goodhead, J Herrero, ...
Nature 483 (7388), 169-175, 2012
Waves of retrotransposon expansion remodel genome organization and CTCF binding in multiple mammalian lineages
D Schmidt, PC Schwalie, MD Wilson, B Ballester, Â Gonçalves, C Kutter, ...
Cell 148 (1), 335-348, 2012
A CTCF-independent role for cohesin in tissue-specific transcription
D Schmidt, PC Schwalie, CS Ross-Innes, A Hurtado, GD Brown, ...
Genome research 20 (5), 578-588, 2010
A stromal cell population that inhibits adipogenesis in mammalian fat depots
PC Schwalie, H Dong, M Zachara, J Russeil, D Alpern, N Akchiche, ...
Nature 559 (7712), 103-108, 2018
Insights into negative regulation by the glucocorticoid receptor from genome-wide profiling of inflammatory cistromes
NH Uhlenhaut, GD Barish, TY Ruth, M Downes, M Karunasiri, C Liddle, ...
Molecular cell 49 (1), 158-171, 2013
Topoisomerase II beta interacts with cohesin and CTCF at topological domain borders
L Uusküla-Reimand, H Hou, P Samavarchi-Tehrani, MV Rudan, M Liang, ...
Genome biology 17, 1-22, 2016
Cohesin regulates tissue-specific expression by stabilizing highly occupied cis-regulatory modules
AJ Faure, D Schmidt, S Watt, PC Schwalie, MD Wilson, H Xu, RG Ramsay, ...
Genome research 22 (11), 2163-2175, 2012
Reversible de-differentiation of mature white adipocytes into preadipocyte-like precursors during lactation
QA Wang, A Song, W Chen, PC Schwalie, F Zhang, L Vishvanath, L Jiang, ...
Cell metabolism 28 (2), 282-288. e3, 2018
GLUT3 is induced during epithelial-mesenchymal transition and promotes tumor cell proliferation in non-small cell lung cancer
M Masin, J Vazquez, S Rossi, S Groeneveld, N Samson, PC Schwalie, ...
Cancer & metabolism 2, 1-14, 2014
ASAP: a web-based platform for the analysis and interactive visualization of single-cell RNA-seq data
V Gardeux, FPA David, A Shajkofci, PC Schwalie, B Deplancke
Bioinformatics 33 (19), 3123-3125, 2017
PD-1-cis IL-2R agonism yields better effectors from stem-like CD8+ T cells
L Codarri Deak, V Nicolini, M Hashimoto, M Karagianni, PC Schwalie, ...
Nature 610 (7930), 161-172, 2022
Identification of the transcription factor ZEB1 as a central component of the adipogenic gene regulatory network
C Gubelmann, PC Schwalie, SK Raghav, E Röder, T Delessa, ...
elife 3, e03346, 2014
The Tumor Profiler Study: integrated, multi-omic, functional tumor profiling for clinical decision support
A Irmisch, X Bonilla, S Chevrier, KV Lehmann, F Singer, NC Toussaint, ...
Cancer Cell 39 (3), 288-293, 2021
Co-binding by YY1 identifies the transcriptionally active, highly conserved set of CTCF-bound regions in primate genomes
PC Schwalie, MC Ward, CE Cain, AJ Faure, Y Gilad, DT Odom, P Flicek
Genome biology 14, 1-15, 2013
Latent regulatory potential of human-specific repetitive elements
MC Ward, MD Wilson, NL Barbosa-Morais, D Schmidt, R Stark, Q Pan, ...
Molecular cell 49 (2), 262-272, 2013
Mechanism and effects of pulsatile GABA secretion from cytosolic pools in the human beta cell
D Menegaz, DW Hagan, J Almaça, C Cianciaruso, R Rodriguez-Diaz, ...
Nature metabolism 1 (11), 1110-1126, 2019
CAST-ChIP maps cell-type-specific chromatin states in the Drosophila central nervous system
T Schauer, PC Schwalie, A Handley, CE Margulies, P Flicek, AG Ladurner
Cell reports 5 (1), 271-282, 2013
ZFP30 promotes adipogenesis through the KAP1-mediated activation of a retrotransposon-derived Pparg2 enhancer
W Chen, PC Schwalie, EV Pankevich, C Gubelmann, SK Raghav, ...
Nature communications 10 (1), 1809, 2019
Gonç alves
D Schmidt, PC Schwalie, MD Wilson, B Ballester
A., Kutter, C., Brown, GD, Marshall, A., Flicek, P., and Odom, DT, 335-348, 2012
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