Adrian Altenhoff
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Phylogenetic and functional assessment of orthologs inference projects and methods
AM Altenhoff, C Dessimoz
PLoS computational biology 5 (1), e1000262, 2009
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ...
Genome biology 17 (1), 1-19, 2016
OMA 2011: orthology inference among 1000 complete genomes
AM Altenhoff, A Schneider, GH Gonnet, C Dessimoz
Nucleic acids research 39 (suppl_1), D289-D294, 2010
The OMA orthology database in 2015: function predictions, better plant support, synteny view and other improvements
AM Altenhoff, N Škunca, N Glover, CM Train, A Sueki, I Piližota, K Gori, ...
Nucleic acids research 43 (D1), D240-D249, 2015
Resolving the ortholog conjecture: orthologs tend to be weakly, but significantly, more similar in function than paralogs
AM Altenhoff, RA Studer, M Robinson-Rechavi, C Dessimoz
PLoS computational biology 8 (5), e1002514, 2012
The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces
AM Altenhoff, NM Glover, CM Train, K Kaleb, A Warwick Vesztrocy, ...
Nucleic acids research 46 (D1), D477-D485, 2018
Standardized benchmarking in the quest for orthologs
AM Altenhoff, B Boeckmann, S Capella-Gutierrez, DA Dalquen, T DeLuca, ...
Nature methods 13 (5), 425-430, 2016
Inferring hierarchical orthologous groups from orthologous gene pairs
AM Altenhoff, M Gil, GH Gonnet, C Dessimoz
PloS one 8 (1), e53786, 2013
Inferring orthology and paralogy
AM Altenhoff, C Dessimoz
Evolutionary genomics, 259-279, 2012
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ...
Genome biology 20 (1), 1-23, 2019
Quality of computationally inferred gene ontology annotations
N Škunca, A Altenhoff, C Dessimoz
PLoS computational biology 8 (5), e1002533, 2012
A gridded hourly precipitation dataset for Switzerland using rain‐gauge analysis and radar‐based disaggregation
M Wüest, C Frei, A Altenhoff, M Hagen, M Litschi, C Schär
International Journal of Climatology 30 (12), 1764-1775, 2010
Linkage of atmospheric blocks and synoptic-scale Rossby waves: A climatological analysis
AM Altenhoff, O Martius, M Croci-Maspoli, C Schwierz, HC Davies
Tellus A: Dynamic Meteorology and Oceanography 60 (5), 1053-1063, 2008
Orthologous Matrix (OMA) algorithm 2.0: more robust to asymmetric evolutionary rates and more scalable hierarchical orthologous group inference
CM Train, NM Glover, GH Gonnet, AM Altenhoff, C Dessimoz
Bioinformatics 33 (14), i75-i82, 2017
OMA standalone: orthology inference among public and custom genomes and transcriptomes
AM Altenhoff, J Levy, M Zarowiecki, B Tomiczek, AW Vesztrocy, ...
Genome research 29 (7), 1152-1163, 2019
A stochastic boundary forcing for dissipative particle dynamics
AM Altenhoff, JH Walther, P Koumoutsakos
Journal of Computational Physics 225 (1), 1125-1136, 2007
The impact of gene duplication, insertion, deletion, lateral gene transfer and sequencing error on orthology inference: a simulation study
DA Dalquen, AM Altenhoff, GH Gonnet, C Dessimoz
PloS one 8 (2), e56925, 2013
Inferring orthology and paralogy
AM Altenhoff, NM Glover, C Dessimoz
Evolutionary genomics, 149-175, 2019
Distinct evolutionary strategies in the GGPPS family from plants
D Coman, A Altenhoff, S Zoller, W Gruissem, E Vranová
Frontiers in plant science 5, 230, 2014
Gearing up to handle the mosaic nature of life in the quest for orthologs
K Forslund, C Pereira, S Capella-Gutierrez, AS da Silva, A Altenhoff, ...
Bioinformatics 34 (2), 323-329, 2018
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