Thomas R. Sokolowski
Thomas R. Sokolowski
Group Leader, Frankfurt Institute for Advanced Studies (FIAS)
Verified email at - Homepage
Cited by
Cited by
Mutual repression enhances the steepness and precision of gene expression boundaries
TR Sokolowski, T Erdmann, PR Ten Wolde
PLoS Comput Biol 8 (8), e1002654, 2012
Optimizing information flow in small genetic networks. IV. Spatial coupling
TR Sokolowski, G Tkačik
Phys Rev E 91 (6), 062710, 2015
eGFRD in all dimensions
TR Sokolowski, J Paijmans, L Bossen, M Wehrens, T Miedema, ...
J Chem Phys 150 (5), 054108, 2019
Statistical analysis and optimality of neural systems
W Młynarski, M Hledík, TR Sokolowski, G Tkačik
Neuron 109 (7), 1227-1241. e5, 2021
Extending the dynamic range of transcription factor action by translational regulation
TR Sokolowski, AM Walczak, W Bialek, G Tkačik
Phys Rev E 93 (2), 022404, 2016
Chimera proteins with affinity for membranes and microtubule tips polarize in the membrane of fission yeast cells
P Recouvreux, TR Sokolowski, A Grammoustianou, PR ten Wolde, ...
Proc Natl Acad Sci USA 113 (7), 1811-1816, 2016
Spatial-Stochastic Simulation of Reaction-Diffusion Systems
TR Sokolowski, PR ten Wolde
B Munsky, WS Hlavacek, LS Tsimring (ed.), "Quantitative Biology: Theory …, 2018
A Tight Upper Bound on Mutual Information
M Hledík, TR Sokolowski, G Tkačik
2019 IEEE Information Theory Workshop (ITW), 1-5, 2019
A computational study of robust formation of spatial protein patterns
TR Sokolowski
Ph.D. thesis, Vrije Universiteit Amsterdam, ISBN 978-90-77209-72-1 …, 2013
Deriving a genetic regulatory network from an optimization principle
TR Sokolowski, T Gregor, W Bialek, G Tkačik
arXiv preprint arXiv:2302.05680, 2023
Green’s Function Reaction Dynamics—An Exact and Efficient Way To simulate Intracellular Pattern Formation
T Sokolowski, L Bossen, T Miedema, N Becker
AIP Conference Proceedings 1281 (1), 1342-1345, 2010
Long-range k-core percolation
CF Moukarzel, T Sokolowski
J. Phys.: Conf. Ser 246, 012019, 2010
Information theory entering soils and tissues
TR Sokolowski
Cell Systems 13 (7), 511-513, 2022
AI-powered simulation-based inference of a genuinely spatial-stochastic model of early mouse embryogenesis
MA Ramírez-Sierra, TR Sokolowski
arXiv preprint arXiv:2402.15330, 2024
Stable developmental patterns of gene expression without morphogen gradients
M Majka, NB Becker, PR Wolde, M Zagorski, TR Sokolowski
arXiv preprint arXiv:2306.00537, 2023
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