| Integrated proteogenomic characterization of human high-grade serous ovarian cancer H Zhang, T Liu, Z Zhang, SH Payne, B Zhang, JE McDermott, JY Zhou, ... Cell 166 (3), 755-765, 2016 | 668 | 2016 |
| Comparative analysis of proteome and transcriptome variation in mouse A Ghazalpour, B Bennett, VA Petyuk, L Orozco, R Hagopian, IN Mungrue, ... PLoS genetics 7 (6), e1001393, 2011 | 616 | 2011 |
| DAnTE: a statistical tool for quantitative analysis of-omics data AD Polpitiya, WJ Qian, N Jaitly, VA Petyuk, JN Adkins, DG Camp, ... Bioinformatics 24 (13), 1556-1558, 2008 | 416 | 2008 |
| Proteogenomic analysis of human colon cancer reveals new therapeutic opportunities S Vasaikar, C Huang, X Wang, VA Petyuk, SR Savage, B Wen, Y Dou, ... Cell 177 (4), 1035-1049. e19, 2019 | 300 | 2019 |
| Ischemia in tumors induces early and sustained phosphorylation changes in stress kinase pathways but does not affect global protein levels P Mertins, F Yang, T Liu, DR Mani, VA Petyuk, MA Gillette, KR Clauser, ... Molecular & cellular proteomics 13 (7), 1690-1704, 2014 | 300 | 2014 |
| Large-scale proteomic analysis of Alzheimer’s disease brain and cerebrospinal fluid reveals early changes in energy metabolism associated with microglia and astrocyte activation ECB Johnson, EB Dammer, DM Duong, L Ping, M Zhou, L Yin, ... Nature medicine 26 (5), 769-780, 2020 | 285 | 2020 |
| Nanodroplet processing platform for deep and quantitative proteome profiling of 10–100 mammalian cells Y Zhu, PD Piehowski, R Zhao, J Chen, Y Shen, RJ Moore, AK Shukla, ... Nature communications 9 (1), 1-10, 2018 | 264 | 2018 |
| Reproducible workflow for multiplexed deep-scale proteome and phosphoproteome analysis of tumor tissues by liquid chromatography–mass spectrometry P Mertins, LC Tang, K Krug, DJ Clark, MA Gritsenko, L Chen, KR Clauser, ... Nature protocols 13 (7), 1632-1661, 2018 | 214 | 2018 |
| Liquid chromatography-mass spectrometry-based quantitative proteomics F Xie, T Liu, WJ Qian, VA Petyuk, RD Smith Journal of Biological Chemistry 286 (29), 25443-25449, 2011 | 213 | 2011 |
| Integrated proteogenomic characterization of clear cell renal cell carcinoma DJ Clark, SM Dhanasekaran, F Petralia, J Pan, X Song, Y Hu, ... Cell 179 (4), 964-983. e31, 2019 | 205 | 2019 |
| Proteogenomic characterization reveals therapeutic vulnerabilities in lung adenocarcinoma MA Gillette, S Satpathy, S Cao, SM Dhanasekaran, SV Vasaikar, K Krug, ... Cell 182 (1), 200-225. e35, 2020 | 179 | 2020 |
| Robust algorithm for alignment of liquid chromatography− mass spectrometry analyses in an accurate mass and time tag data analysis pipeline N Jaitly, ME Monroe, VA Petyuk, TRW Clauss, JN Adkins, RD Smith Analytical chemistry 78 (21), 7397-7409, 2006 | 179 | 2006 |
| Sources of technical variability in quantitative LC–MS proteomics: human brain tissue sample analysis PD Piehowski, VA Petyuk, DJ Orton, F Xie, RJ Moore, ... Journal of proteome research 12 (5), 2128-2137, 2013 | 154 | 2013 |
| Characterization of the mouse brain proteome using global proteomic analysis complemented with cysteinyl-peptide enrichment H Wang, WJ Qian, MH Chin, VA Petyuk, RC Barry, T Liu, MA Gritsenko, ... Journal of proteome research 5 (2), 361-369, 2006 | 149* | 2006 |
| Proteogenomic characterization of endometrial carcinoma Y Dou, EA Kawaler, DC Zhou, MA Gritsenko, C Huang, L Blumenberg, ... Cell 180 (4), 729-748. e26, 2020 | 143 | 2020 |
| Label-free quantitative LC–MS proteomics of Alzheimer’s disease and normally aged human brains VP Andreev, VA Petyuk, HM Brewer, YV Karpievitch, F Xie, J Clarke, ... Journal of proteome research 11 (6), 3053-3067, 2012 | 127 | 2012 |
| Prediction of cognition in Parkinson's disease with a clinical–genetic score: a longitudinal analysis of nine cohorts G Liu, JJ Locascio, JC Corvol, B Boot, Z Liao, K Page, D Franco, K Burke, ... The Lancet Neurology 16 (8), 620-629, 2017 | 123 | 2017 |
| Mitochondrial dysfunction, oxidative stress, and apoptosis revealed by proteomic and transcriptomic analyses of the striata in two mouse models of Parkinson’s disease MH Chin, WJ Qian, H Wang, VA Petyuk, JS Bloom, DM Sforza, G Lacan, ... Journal of proteome research 7 (2), 666-677, 2008 | 103 | 2008 |
| Conservation of protein abundance patterns reveals the regulatory architecture of the EGFR-MAPK pathway T Shi, M Niepel, JE McDermott, Y Gao, CD Nicora, WB Chrisler, ... Science Signaling 9 (436), rs6-rs6, 2016 | 100 | 2016 |
| Proteogenomic and metabolomic characterization of human glioblastoma LB Wang, A Karpova, MA Gritsenko, JE Kyle, S Cao, Y Li, D Rykunov, ... Cancer Cell 39 (4), 509-528. e20, 2021 | 98 | 2021 |
Richard D SmithChief Scientist and Battelle Fellow, Biological Sciences Division, PNNLVerified email at pnnl.gov
