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Tomas Flouri
Tomas Flouri
Other namesThomas Flouris
Verified email at ucl.ac.uk
Title
Cited by
Cited by
Year
VSEARCH: a versatile open source tool for metagenomics
T Rognes, T Flouri, B Nichols, C Quince, F Mahé
PeerJ 4, e2584, 2016
53302016
PEAR: a fast and accurate Illumina Paired-End reAd mergeR
J Zhang, K Kobert, T Flouri, A Stamatakis
Bioinformatics 30 (5), 614-620, 2014
33232014
Phylogenomics resolves the timing and pattern of insect evolution
B Misof, S Liu, K Meusemann, RS Peters, A Donath, C Mayer, ...
Science 346 (6210), 763-767, 2014
21142014
RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference
AM Kozlov, D Darriba, T Flouri, B Morel, A Stamatakis
Bioinformatics 35 (21), 4453-4455, 2019
14752019
ModelTest-NG: a new and scalable tool for the selection of DNA and protein evolutionary models
D Darriba, D Posada, AM Kozlov, A Stamatakis, B Morel, T Flouri
Molecular biology and evolution 37 (1), 291-294, 2020
6852020
VSEARCH: a versatile open source tool for metagenomics. PeerJ 4: e2584
T Rognes, T Flouri, B Nichols, C Quince, F Mahé
6182016
Multi-rate Poisson tree processes for single-locus species delimitation under maximum likelihood and Markov chain Monte Carlo
P Kapli, S Lutteropp, J Zhang, K Kobert, P Pavlidis, A Stamatakis, T Flouri
Bioinformatics 33 (11), 1630-1638, 2017
5742017
EPA-ng: massively parallel evolutionary placement of genetic sequences
P Barbera, AM Kozlov, L Czech, B Morel, D Darriba, T Flouri, ...
Systematic biology 68 (2), 365-369, 2019
2962019
Species tree inference with BPP using genomic sequences and the multispecies coalescent
T Flouri, X Jiao, B Rannala, Z Yang
Molecular biology and evolution 35 (10), 2585-2593, 2018
2242018
VSEARCH: a versatile open source tool for metagenomics. PeerJ. 2016; 4: e2584
T Rognes, T Flouri, B Nichols, C Quince, F Mahé
2222016
The phylogenetic likelihood library
T Flouri, F Izquierdo-Carrasco, D Darriba, AJ Aberer, LT Nguyen, BQ Minh, ...
Systematic biology 64 (2), 356-362, 2015
1102015
MPBoot: fast phylogenetic maximum parsimony tree inference and bootstrap approximation
DT Hoang, LS Vinh, T Flouri, A Stamatakis, A von Haeseler, BQ Minh
BMC evolutionary biology 18 (1), 1-11, 2018
1052018
Response to Comment on “Phylogenomics resolves the timing and pattern of insect evolution"
KM Kjer, JL Ware, A Blanke, A Donath, T Flouri, PB Frandsen, P Kapli, ...
Science 349 (6247), 487, 2015
782015
A Bayesian implementation of the multispecies coalescent model with introgression for phylogenomic analysis
T Flouri, X Jiao, B Rannala, Z Yang
Molecular biology and evolution 37 (4), 1211-1223, 2020
752020
An integrative phylogenomic approach to elucidate the evolutionary history and divergence times of Neuropterida (Insecta: Holometabola)
A Vasilikopoulos, B Misof, K Meusemann, D Lieberz, T Flouri, RG Beutel, ...
BMC Evolutionary Biology 20 (1), 1-24, 2020
552020
Longest common substrings with k mismatches
T Flouri, E Giaquinta, K Kobert, E Ukkonen
Information Processing Letters 115 (6-8), 643-647, 2015
412015
The state of software for evolutionary biology
D Darriba, T Flouri, A Stamatakis
Molecular biology and evolution 35 (5), 1037-1046, 2018
362018
Species delimitation
B Rannala, Z Yang
Phylogenetics in the genomic era, 5.5: 1--5.5: 18, 2020
332020
Enhanced string covering
T Flouri, CS Iliopoulos, T Kociumaka, SP Pissis, SJ Puglisi, WF Smyth, ...
Theoretical Computer Science 506, 102-114, 2013
332013
Molecular phylogeny of Oreochromis (Cichlidae: Oreochromini) reveals mito-nuclear discordance and multiple colonisation of adverse aquatic environments
AGP Ford, TR Bullen, L Pang, MJ Genner, R Bills, T Flouri, BP Ngatunga, ...
Molecular phylogenetics and evolution 136, 215-226, 2019
312019
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Articles 1–20