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Yi-Chieh Wu
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Integrative analysis of 111 reference human epigenomes
A Kundaje, W Meuleman, J Ernst, M Bilenky, A Yen, A Heravi-Moussavi, ...
Nature 518 (7539), 317-330, 2015
59272015
A comparative encyclopedia of DNA elements in the mouse genome
F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ...
Nature 515 (7527), 355-364, 2014
18882014
Extensive introgression in a malaria vector species complex revealed by phylogenomics
MC Fontaine, JB Pease, A Steele, RM Waterhouse, DE Neafsey, ...
Science 347 (6217), 1258524, 2015
5872015
Highly evolvable malaria vectors: The genomes of 16 Anopheles mosquitoes
DE Neafsey, RM Waterhouse, MR Abai, SS Aganezov, MA Alekseyev, ...
Science 347 (6217), 1258522, 2015
5752015
Comparative analysis of regulatory information and circuits across distant species
AP Boyle, CL Araya, C Brdlik, P Cayting, C Cheng, Y Cheng, K Gardner, ...
Nature 512 (7515), 453-456, 2014
2222014
Phylogenetic Identification and Functional Characterization of Orthologs and Paralogs across Human, Mouse, Fly, and Worm. bioRxiv. 2014
YC Wu, MS Bansal, MD Rasmussen
Publisher Full Text, 0
184
TreeFix: statistically informed gene tree error correction using species trees
YC Wu, MD Rasmussen, MS Bansal, M Kellis
Systematic biology 62 (1), 110-120, 2013
1232013
Most parsimonious reconciliation in the presence of gene duplication, loss, and deep coalescence using labeled coalescent trees
YC Wu, MD Rasmussen, MS Bansal, M Kellis
Genome research 24 (3), 475-486, 2014
732014
Improved gene tree error correction in the presence of horizontal gene transfer
MS Bansal, YC Wu, EJ Alm, M Kellis
Bioinformatics 31 (8), 1211-1218, 2015
662015
Pareto-optimal phylogenetic tree reconciliation
R Libeskind-Hadas, YC Wu, MS Bansal, M Kellis
Bioinformatics 30 (12), i87-i95, 2014
612014
eMPRess: a systematic cophylogeny reconciliation tool
S Santichaivekin, Q Yang, J Liu, R Mawhorter, J Jiang, T Wesley, YC Wu, ...
Bioinformatics 37 (16), 2481-2482, 2021
542021
Evolution at the Subgene Level: Domain Rearrangements in the Drosophila Phylogeny
YC Wu, MD Rasmussen, M Kellis
Molecular biology and evolution 29 (2), 689-705, 2012
542012
Predicting antibody developability from sequence using machine learning
X Chen, T Dougherty, C Hong, R Schibler, YC Zhao, R Sadeghi, ...
biorxiv, 2020.06. 18.159798, 2020
212020
Computing the diameter of the space of maximum parsimony reconciliations in the duplication-transfer-loss model
J Haack, E Zupke, N Ramirez, YC Wu, R Libeskind-Hadas
IEEE/ACM Transactions on Computational Biology and Bioinformatics 16 (1), 14-22, 2018
142018
Inverse gold photonic crystals and conjugated polymer coated opals for functional materials
PB Landon, J Gutierrez, JP Ferraris, IL Martinez, R Giridharagopal, ...
Physica B: Condensed Matter 338 (1-4), 165-170, 2003
132003
Phylogenetic identification and functional characterization of orthologs and paralogs across human, mouse, fly, and worm
YC Wu, MS Bansal, MD Rasmussen, J Herrero, M Kellis
Biorxiv, 005736, 2014
122014
Coestimation of gene trees and reconciliations under a duplication-loss-coalescence model
B Zhang, YC Wu
Bioinformatics Research and Applications: 13th International Symposium …, 2017
102017
Multiple optimal reconciliations under the duplication-loss-coalescence model
H Du, YS Ong, M Knittel, R Mawhorter, N Liu, G Gross, R Tojo, ...
IEEE/ACM transactions on computational biology and bioinformatics 18 (6 …, 2019
82019
Reconciliation feasibility in the presence of gene duplication, loss, and coalescence with multiple individuals per species
J Rogers, A Fishberg, N Youngs, YC Wu
BMC bioinformatics 18, 1-10, 2017
72017
A polynomial-time algorithm for minimizing the deep coalescence cost for level-1 species networks
M LeMay, R Libeskind-Hadas, YC Wu
IEEE/ACM Transactions on Computational Biology and Bioinformatics 19 (5 …, 2021
62021
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