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Ravin Poudel
Ravin Poudel
Bioinformatics Scientist
Adresse e-mail validée de ufl.edu
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Microbiome networks: a systems framework for identifying candidate microbial assemblages for disease management
R Poudel, A Jumpponen, DC Schlatter, TC Paulitz, BBMS Gardener, ...
Phytopathology 106 (10), 1083-1096, 2016
2842016
Rootstocks shape the rhizobiome: rhizosphere and endosphere bacterial communities in the grafted tomato system
R Poudel, A Jumpponen, MM Kennelly, CL Rivard, L Gomez-Montano, ...
Applied and Environmental Microbiology 85 (2), e01765-18, 2019
922019
Network analysis: a systems framework to address grand challenges in plant pathology
KA Garrett, RI Alcalá-Briseño, KF Andersen, CE Buddenhagen, ...
Annual review of phytopathology 56, 559-580, 2018
612018
Precipitation increases the abundance of some groups of root‐associated fungal endophytes in a semiarid grassland
J Herrera, R Poudel, KA Nebel, SL Collins
Ecosphere 2 (4), 1-14, 2011
482011
Molecular characterization of coprophilous fungal communities reveals sequences related to root-associated fungal endophytes
J Herrera, R Poudel, HH Khidir
Microbial Ecology 61, 239-244, 2011
462011
Soil influences colonization of root-associated fungal endophyte communities of maize, wheat, and their progenitors
D Bokati, J Herrera, R Poudel
Journal of Mycology 2016, 2016
412016
Exposure to airborne bacteria depends upon vertical stratification and vegetation complexity
JM Robinson, C Cando-Dumancela, RE Antwis, R Cameron, C Liddicoat, ...
Scientific Reports 11 (1), 9516, 2021
342021
Assessment of root-associated fungal communities colonizing two species of tropical grasses reveals incongruence to fungal communities of North American native grasses
J Herrera, R Poudel, D Bokati
Fungal Ecology 6 (1), 65-69, 2013
262013
Penicillin trunk injection affects bacterial community structure in citrus trees
MS Ascunce, K Shin, JC Huguet-Tapia, R Poudel, KA Garrett, ...
Microbial ecology 78, 457-469, 2019
202019
Effect of p53 activity on the sensitivity of human glioblastoma cells to PARP‐1 inhibitor in combination with topoisomerase I inhibitor or radiation
F Sabbatino, C Fusciello, D Somma, R Pacelli, R Poudel, D Pepin, ...
Cytometry Part A 85 (11), 953-961, 2014
182014
Effective altruism as an ethical lens on research priorities
KA Garrett, RI Alcalá-Briseño, KF Andersen, J Brawner, RA Choudhury, ...
Phytopathology 110 (4), 708-722, 2020
102020
Rice plant–soil microbiome interactions driven by root and shoot biomass
CP Fernández-Baca, AR Rivers, JE Maul, W Kim, R Poudel, AM McClung, ...
Diversity 13 (3), 125, 2021
72021
GuideMaker: Software to design CRISPR-Cas guide RNA pools in non-model genomes
R Poudel, LT Rodriguez, CR Reisch, AR Rivers
GigaScience 11, giac007, 2022
62022
A rice variety with a high straw biomass retained nitrogen and phosphorus without affecting soil bacterial species
KAG Xinqiang Liang, Fayong Li, Sheng Wang, Guifen Hua, Miaomiao He ...
Soil Ecol. Lett., 2020
52020
CHAPTER 3: Adapting Disease Management Systems Under Global Change
KA Garrett, RI Alcalá-Briseño, KF Andersen, RA Choudhury, W Dantes, ...
Emerging plant diseases and global food security, 31-50, 2020
42020
Integration of Phenotypes in Microbiome Networks for Designing Synthetic Communities: a Study of Mycobiomes in the Grafted Tomato System
R Poudel, A Jumpponen, MM Kennelly, C Rivard, L Gomez-Montano, ...
Applied and Environmental Microbiology 89 (6), e01843-22, 2023
22023
Elucidating the effects of organic vs. conventional cropping practice and rhizobia inoculation on rhizosphere microbial diversity and yield of peanut
D Paudel, L Wang, R Poudel, JP Acharya, S Victores, CHL de Souza, ...
Environmental Microbiome 18 (1), 60, 2023
12023
An Arrayed Transposon Library of Ruegeria pomeroyi DSS-3
C Mejia, L Trujillo Rodriguez, R Poudel, A Ellington, AR Rivers, ...
bioRxiv, 2022.09. 11.507510, 2022
12022
Integration of system phenotypes in microbiome networks to identify candidate synthetic communities: a study of the grafted tomato rhizobiome
R Poudel, A Jumpponen, MM Kennelly, C Rivard, L Gomez-Montano, ...
bioRxiv, 2019.12. 12.874966, 2019
12019
Microbiome networks: A systems framework for identifying candidate microbial assemblages for disease management in the era of genomics and phytobiomes
R Poudel, L Meyer, A Jumpponen, MM Kennelly, CL Rivard, DC Schlatter, ...
2017 APS Annual Meeting, 2017
12017
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