|Zika viral dynamics and shedding in rhesus and cynomolgus macaques|
CE Osuna, SY Lim, C Deleage, BD Griffin, D Stein, LT Schroeder, ...
Nature medicine 22 (12), 1448, 2016
|Zika virus persistence in the central nervous system and lymph nodes of rhesus monkeys|
M Aid, P Abbink, RA Larocca, M Boyd, R Nityanandam, O Nanayakkara, ...
Cell 169 (4), 610-620. e14, 2017
|T-cell receptor repertoires share a restricted set of public and abundant CDR3 sequences that are associated with self-related immunity|
A Madi, E Shifrut, S Reich-Zeliger, H Gal, K Best, W Ndifon, B Chain, ...
Genome research 24 (10), 1603-1612, 2014
|Tracking global changes induced in the CD4 T-cell receptor repertoire by immunization with a complex antigen using short stretches of CDR3 protein sequence|
N Thomas, K Best, M Cinelli, S Reich-Zeliger, H Gal, E Shifrut, A Madi, ...
Bioinformatics 30 (22), 3181-3188, 2014
|Computational analysis of stochastic heterogeneity in PCR amplification efficiency revealed by single molecule barcoding|
K Best, T Oakes, JM Heather, J Shawe-Taylor, B Chain
Scientific reports 5, 14629, 2015
|Zika plasma viral dynamics in nonhuman primates provides insights into early infection and antiviral strategies|
K Best, J Guedj, V Madelain, X de Lamballerie, SY Lim, CE Osuna, ...
Proceedings of the National Academy of Sciences 114 (33), 8847-8852, 2017
|Dynamic perturbations of the T-cell receptor repertoire in chronic HIV infection and following antiretroviral therapy|
JM Heather, K Best, T Oakes, ER Gray, JK Roe, N Thomas, N Friedman, ...
Frontiers in immunology 6, 644, 2016
|Quantitative characterization of the T cell receptor repertoire of na´ve and memory subsets using an integrated experimental and computational pipeline which is robustá…|
T Oakes, JM Heather, K Best, R Byng-Maddick, C Husovsky, M Ismail, ...
Frontiers in immunology 8, 1267, 2017
|Blood transcriptomic diagnosis of pulmonary and extrapulmonary tuberculosis|
JK Roe, N Thomas, E Gil, K Best, E Tsaliki, S Morris‑Jones, S Stafford, ...
JCI insight 1 (16), 2016
|Feature selection using a one dimensional na´ve Bayes' classifier increases the accuracy of support vector machine classification of CDR3 repertoires.|
M Cinelli, Y Sun, K Best, JM Heather, S Reich-Zeliger, E Shifrut, ...
Bioinformatics 33 (7), 951-955, 2017
|Specificity, privacy, and degeneracy in the CD4 T cell receptor repertoire following immunization|
Y Sun, K Best, M Cinelli, JM Heather, S Reich-Zeliger, E Shifrut, ...
Frontiers in immunology 8, 430, 2017
|Mathematical modeling of within‐host Zika virus dynamics|
K Best, AS Perelson
Immunological reviews 285 (1), 81-96, 2018
|The T cell response to the contact sensitizer paraphenylenediamine is characterized by a polyclonal diverse repertoire of antigen-specific receptors|
T Oakes, AL Popple, J Williams, K Best, JM Heather, M Ismail, G Maxwell, ...
Frontiers in immunology 8, 162, 2017
|Transcriptional profiling of endobronchial ultrasound-guided lymph node samples aids diagnosis of mediastinal lymphadenopathy|
GS Tomlinson, N Thomas, BM Chain, K Best, N Simpson, G Hardavella, ...
Chest 149 (2), 535-544, 2016
|Principles governing establishment versus collapse of HIV-1 cellular spread|
JM Hataye, JP Casazza, K Best, CJ Liang, TT Immonen, DR Ambrozak, ...
Cell host & microbe 26 (6), 748-763. e20, 2019
|Immune tolerance maintained by cooperative interactions between T cells and antigen presenting cells shapes a diverse TCR repertoire|
K Best, B Chain, C Watkins
Frontiers in immunology 6, 360, 2015
|S62 Mycobacterial escape by non-lytic egress|
MR Mehta, K Best, J Roe, R Byng-Maddick, E Potton, D Stirling, G Pollara, ...
Thorax 73 (Suppl 4), A38-A39, 2018