Matthew E Ritchie

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Gordon K SmythDivision Head, Bioinformatics, Walter and Eliza Hall Institute of Medical ResearchVerified email at wehi.edu.au
Charity W LawThe Walter and Eliza Hall Institute of Medical ResearchVerified email at wehi.edu.au
Shian SuWalter and Eliza Hall InstituteVerified email at wehi.edu.au
Wei ShiProfessor, Olivia Newton-John Cancer Research InstituteVerified email at onjcri.org.au
Blewitt ME, Blewitt M, Champ MELaboratory head, Walter and Eliza Hall InstituteVerified email at wehi.edu.au
Xueyi DongWalter and Eliza Hall Institute of Medical ResearchVerified email at wehi.edu.au
Luyi TianBroad Institute of MIT and HarvardVerified email at broadinstitute.org
Simon TavaréColumbia UniversityVerified email at columbia.edu
Belinda PhipsonLaboratory Head, The Walter and Eliza Hall Institute of Medical ResearchVerified email at wehi.edu.au
Ruijie (Cynthia) LiuSt Vincent's institute of medical researchVerified email at svi.edu.au
Julie M SheridanThe Walter and Eliza Hall InstituteVerified email at wehi.edu.au
Quentin GouilThe Walter and Eliza Hall Institute of Medical ResearchVerified email at wehi.edu.au
Mark J DunningUniversity of SheffieldVerified email at sheffield.ac.uk
Asselin-LabatThe Walter and Eliza Hall Institute of Medical ResearchVerified email at wehi.edu.au
Di WuAssociate Professor, Biostatistics Department, jointly with Adams Schools Dentistry at University ofVerified email at unc.edu
Monther Alhamdoosh, PhDCSL LimitedVerified email at csl.com.au
Peter HickeySenior Research Officer, Single Cell Open Research Endeavour, Walter and Eliza Hall Institute ofVerified email at wehi.edu.au
Shalin H. NaikGroup Leader, Walter + Eliza Hall InstituteVerified email at wehi.edu.au
Aliaksei Z HolikClarivate Analytics, Barcelona, SpainVerified email at clarivate.com
Andy LynchUniversity of St AndrewsVerified email at st-andrews.ac.uk

Matthew E Ritchie

The Walter and Eliza Hall Institute of Medical Research

Verified email at wehi.edu.au - Homepage

bioinformatics genomics


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limma powers differential expression analyses for RNA-sequencing and microarray studies ME Ritchie, B Phipson, DI Wu, Y Hu, CW Law, W Shi, GK Smyth Nucleic acids research 43 (7), e47-e47, 2015	17001	2015
A comparison of background correction methods for two-colour microarrays ME Ritchie, J Silver, A Oshlack, M Holmes, D Diyagama, A Holloway, ... Bioinformatics 23 (20), 2700-2707, 2007	1080	2007
Apoptotic caspases suppress mtDNA-induced STING-mediated type I IFN production MJ White, K McArthur, D Metcalf, RM Lane, JC Cambier, MJ Herold, ... Cell 159 (7), 1549-1562, 2014	550	2014
beadarray: R classes and methods for Illumina bead-based data MJ Dunning, ML Smith, ME Ritchie, S Tavaré Bioinformatics 23 (16), 2183-2184, 2007	547	2007
Opportunities and challenges in long-read sequencing data analysis SL Amarasinghe, S Su, X Dong, L Zappia, ME Ritchie, Q Gouil Genome biology 21 (1), 1-16, 2020	473	2020
RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR CW Law, M Alhamdoosh, S Su, X Dong, L Tian, GK Smyth, ME Ritchie F1000Research 5, 2016	409	2016
Empirical array quality weights in the analysis of microarray data ME Ritchie, D Diyagama, J Neilson, R van Laar, A Dobrovic, A Holloway, ... BMC bioinformatics 7 (1), 1-16, 2006	299	2006
Why weight? Modelling sample and observational level variability improves power in RNA-seq analyses R Liu, AZ Holik, S Su, N Jansz, K Chen, HS Leong, ME Blewitt, ... Nucleic acids research 43 (15), e97-e97, 2015	284	2015
A re-annotation pipeline for Illumina BeadArrays: improving the interpretation of gene expression data NL Barbosa-Morais, MJ Dunning, SA Samarajiwa, JFJ Darot, ME Ritchie, ... Nucleic acids research 38 (3), e17-e17, 2010	273	2010
Targeting BCL-2 with the BH3 mimetic ABT-199 in estrogen receptor-positive breast cancer F Vaillant, D Merino, L Lee, K Breslin, B Pal, ME Ritchie, GK Smyth, ... Cancer cell 24 (1), 120-129, 2013	266	2013
Sensitization of BCL-2–expressing breast tumors to chemotherapy by the BH3 mimetic ABT-737 SR Oakes, F Vaillant, E Lim, L Lee, K Breslin, F Feleppa, S Deb, ... Proceedings of the National Academy of Sciences, 2011	190	2011
Microarray background correction: maximum likelihood estimation for the normal–exponential convolution JD Silver, ME Ritchie, GK Smyth Biostatistics 10 (2), 352-363, 2009	187	2009
Benchmarking single cell RNA-sequencing analysis pipelines using mixture control experiments L Tian, X Dong, S Freytag, KA Lê Cao, S Su, A JalalAbadi, ... Nature methods 16 (6), 479-487, 2019	166	2019
197: The apoptotic caspase cascade suppresses mitochondrial DNA-induced STING-mediated type I IFN production by dying cells MJ White, K McArthur, D Metcalf, J Cambier, S Bedoui, M Ritchie, ... Cytokine 70 (1), 75-76, 2014	160	2014
Opposing roles of polycomb repressive complexes in hematopoietic stem and progenitor cells IJ Majewski, ME Ritchie, B Phipson, J Corbin, M Pakusch, A Ebert, ... Blood, The Journal of the American Society of Hematology 116 (5), 731-739, 2010	144	2010
Multidisciplinary diabetes care with and without bariatric surgery in overweight people: a randomised controlled trial JM Wentworth, J Playfair, C Laurie, ME Ritchie, WA Brown, P Burton, ... The lancet Diabetes & endocrinology 2 (7), 545-552, 2014	139	2014
Global changes in the mammary epigenome are induced by hormonal cues and coordinated by Ezh2 B Pal, T Bouras, W Shi, F Vaillant, JM Sheridan, N Fu, K Breslin, K Jiang, ... Cell reports 3 (2), 411-426, 2013	132	2013
Synergy between the KEAP1/NRF2 and PI3K pathways drives non-small-cell lung cancer with an altered immune microenvironment SA Best, DP De Souza, A Kersbergen, AN Policheni, S Dayalan, D Tull, ... Cell metabolism 27 (4), 935-943. e4, 2018	129	2018
Statistical issues in the analysis of Illumina data MJ Dunning, NL Barbosa-Morais, AG Lynch, S Tavaré, ME Ritchie BMC bioinformatics 9 (1), 1-15, 2008	129	2008
Integrative analysis of RUNX1 downstream pathways and target genes J Michaud, KM Simpson, R Escher, K Buchet-Poyau, T Beissbarth, ... BMC genomics 9 (1), 1-17, 2008	128	2008

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