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Mathieu Seppey
Mathieu Seppey
Postdoc at University of Geneva Medical School and Swiss Institute of Bioinformatics
Verified email at unige.ch
Title
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Cited by
Year
BUSCO update: novel and streamlined workflows along with broader and deeper phylogenetic coverage for scoring of eukaryotic, prokaryotic, and viral genomes
M Manni, MR Berkeley, M Seppey, FA Simão, EM Zdobnov
Molecular biology and evolution 38 (10), 4647-4654, 2021
21942021
BUSCO applications from quality assessments to gene prediction and phylogenomics
RM Waterhouse, M Seppey, FA Simão, M Manni, P Ioannidis, ...
Molecular biology and evolution 35 (3), 543-548, 2018
18392018
BUSCO: assessing genome assembly and annotation completeness
M Seppey, M Manni, EM Zdobnov
Gene prediction: methods and protocols, 227-245, 2019
15392019
OrthoDB v9. 1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs
EM Zdobnov, F Tegenfeldt, D Kuznetsov, RM Waterhouse, FA Simão, ...
Nucleic acids research 45 (D1), D744-D749, 2017
4432017
BUSCO: assessing genomic data quality and beyond
M Manni, MR Berkeley, M Seppey, EM Zdobnov
Current Protocols 1 (12), e323, 2021
3512021
Gene prediction: methods and protocols
M Seppey, M Manni, EM Zdobnov, M Kollmar
Methods Mol. Biol 1962, 227-245, 2019
1522019
The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals
FB Bastian, J Roux, A Niknejad, A Comte, SS Fonseca Costa, ...
Nucleic acids research 49 (D1), D831-D847, 2021
1282021
OrthoDB v11: annotation of orthologs in the widest sampling of organismal diversity
D Kuznetsov, F Tegenfeldt, M Manni, M Seppey, M Berkeley, ...
Nucleic Acids Research 51 (D1), D445-D451, 2023
862023
Genomic Features of the Damselfly Calopteryx splendens Representing a Sister Clade to Most Insect Orders
P Ioannidis, FA Simao, RM Waterhouse, M Manni, M Seppey, ...
Genome biology and evolution 9 (2), 415-430, 2017
702017
The Genome of the Toluene-Degrading Pseudomonas veronii Strain 1YdBTEX2 and Its Differential Gene Expression in Contaminated Sand
M Morales, V Sentchilo, C Bertelli, A Komljenovic, N Kryuchkova-Mostacci, ...
PLoS One 11 (11), e0165850, 2016
292016
Using BUSCO to assess insect genomic resources
RM Waterhouse, M Seppey, FA Simão, EM Zdobnov
Insect Genomics: Methods and Protocols, 59-74, 2019
282019
Genomic signatures accompanying the dietary shift to phytophagy in polyphagan beetles
M Seppey, P Ioannidis, BC Emerson, C Pitteloud, M Robinson-Rechavi, ...
Genome biology 20, 1-14, 2019
262019
LEMMI: A continuous benchmarking platform for metagenomics classifiers
M Seppey, M Manni, EM Zdobnov
Genome Research, gr. 260398.119, 2020
21*2020
Advancing Genomics with OrthoDB, BUSCO, and the LEM Framework
EV Kriventseva, M Manni, M Seppey, F Tegenfeldt, M Berkeley, ...
4th Belgrade Bioinformatics Conference 4, 31-31, 2023
2023
Benchmarking in (meta-) genomics: LEMMI & BUSCO
M Seppey
University of Geneva, 2020
2020
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