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Syed Murtuza Baker
Syed Murtuza Baker
Bioinformatics Core Facility, Faculty of Biology, Medicne and Health, University of Manchester
Verified email at manchester.ac.uk - Homepage
Title
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Cited by
Year
Longitudinal immune profiling reveals key myeloid signatures associated with COVID-19
ER Mann, M Menon, SB Knight, JE Konkel, C Jagger, TN Shaw, ...
Science immunology 5 (51), eabd6197, 2020
1462020
Comparison of different algorithms for simultaneous estimation of multiple parameters in kinetic metabolic models
SM Baker, K Schallau, BH Junker
Journal of integrative bioinformatics 7 (3), 254-262, 2010
572010
Pol II promoter prediction using characteristic 4-mer motifs: a machine learning approach
F Anwar, SM Baker, T Jabid, M Mehedi Hasan, M Shoyaib, H Khan, ...
BMC bioinformatics 9 (1), 1-8, 2008
482008
Alterations in T and B cell function persist in convalescent COVID-19 patients
HA Shuwa, TN Shaw, SB Knight, K Wemyss, FA McClure, L Pearmain, ...
Med 2 (6), 720-735. e4, 2021
472021
A living biobank of ovarian cancer ex vivo models reveals profound mitotic heterogeneity
L Nelson, A Tighe, A Golder, S Littler, B Bakker, D Moralli, ...
Nature communications 11 (1), 1-18, 2020
462020
Classifying cells with Scasat, a single-cell ATAC-seq analysis tool
SM Baker, C Rogerson, A Hayes, AD Sharrocks, M Rattray
Nucleic acids research 47 (2), e10-e10, 2019
452019
ZIC3 controls the transition from naive to primed pluripotency
SH Yang, M Andrabi, R Biss, SM Baker, M Iqbal, AD Sharrocks
Cell Reports 27 (11), 3215-3227. e6, 2019
332019
Targeting the IL33–NLRP3 axis improves therapy for experimental cerebral malaria
P Strangward, MJ Haley, MG Albornoz, J Barrington, T Shaw, R Dookie, ...
Proceedings of the National Academy of Sciences 115 (28), 7404-7409, 2018
312018
Respectful modeling: addressing uncertainty in dynamic system models for molecular biology
A Tsigkinopoulou, SM Baker, R Breitling
Trends in Biotechnology 35 (6), 518-529, 2017
202017
An improved constraint filtering technique for inferring hidden states and parameters of a biological model
S Murtuza Baker, CH Poskar, F Schreiber, BH Junker
Bioinformatics 29 (8), 1052-1059, 2013
192013
A unified framework for estimating parameters of kinetic biological models
SM Baker, CH Poskar, F Schreiber, BH Junker
BMC bioinformatics 16 (1), 1-21, 2015
172015
Unscented Kalman filter with parameter identifiability analysis for the estimation of multiple parameters in kinetic models
SM Baker, CH Poskar, BH Junker
EURASIP Journal on Bioinformatics and Systems Biology 2011 (1), 1-8, 2011
152011
Reciprocal transcription factor networks govern tissue-resident ILC3 subset function and identity
R Fiancette, CM Finlay, C Willis, SL Bevington, J Soley, STH Ng, ...
Nature immunology 22 (10), 1245-1255, 2021
132021
HOX paralogs selectively convert binding of ubiquitous transcription factors into tissue-specific patterns of enhancer activation
L Bridoux, P Zarrineh, J Mallen, M Phuycharoen, V Latorre, F Ladam, ...
PLoS genetics 16 (12), e1009162, 2020
132020
Chronic myelomonocytic leukaemia stem cell transcriptomes anticipate disease morphology and outcome
DH Wiseman, SM Baker, AV Dongre, K Gurashi, JA Storer, ...
EBioMedicine 58, 102904, 2020
132020
Murine AGM single-cell profiling identifies a continuum of hemogenic endothelium differentiation marked by ACE
MZH Fadlullah, WH Neo, M Lie-A-Ling, R Thambyrajah, R Patel, R Mevel, ...
Blood, The Journal of the American Society of Hematology 139 (3), 343-356, 2022
102022
Foxm1 regulates neural progenitor fate during spinal cord regeneration
D Pelzer, LS Phipps, R Thuret, CJ Gallardo‐Dodd, SM Baker, K Dorey
EMBO reports 22 (9), e50932, 2021
72021
Protein secondary structure prediction with high accuracy using support vector machine
M Shoyaib, SM Baker, T Jabid, F Anwar, H Khan
2007 10th international conference on computer and information technology, 1-4, 2007
72007
A new adaptive routing approach based on Ant Colony Optimization (ACO) for Ad hoc Wireless Networks
NM Chowdhury, SM Baker, EH Choudhury
2008 11th International Conference on Computer and Information Technology, 51-56, 2008
62008
In vivo labeling reveals continuous trafficking of TCF-1+ T cells between tumor and lymphoid tissue
Z Li, ZK Tuong, I Dean, C Willis, F Gaspal, R Fiancette, S Idris, B Kennedy, ...
Journal of Experimental Medicine 219 (6), 2022
32022
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