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Syed Murtuza Baker
Syed Murtuza Baker
Bioinformatics Core Facility, Faculty of Biology, Medicne and Health, University of Manchester
Verified email at manchester.ac.uk - Homepage
Title
Cited by
Cited by
Year
Longitudinal immune profiling reveals key myeloid signatures associated with COVID-19
ER Mann, M Menon, SB Knight, JE Konkel, C Jagger, TN Shaw, ...
Science immunology 5 (51), eabd6197, 2020
2112020
Alterations in T and B cell function persist in convalescent COVID-19 patients
HA Shuwa, TN Shaw, SB Knight, K Wemyss, FA McClure, L Pearmain, ...
Med 2 (6), 720-735. e4, 2021
1302021
A living biobank of ovarian cancer ex vivo models reveals profound mitotic heterogeneity
L Nelson, A Tighe, A Golder, S Littler, B Bakker, D Moralli, ...
Nature communications 11 (1), 822, 2020
662020
Comparison of different algorithms for simultaneous estimation of multiple parameters in kinetic metabolic models
SM Baker, K Schallau, BH Junker
Journal of integrative bioinformatics 7 (3), 254-262, 2010
652010
Classifying cells with Scasat, a single-cell ATAC-seq analysis tool
SM Baker, C Rogerson, A Hayes, AD Sharrocks, M Rattray
Nucleic acids research 47 (2), e10-e10, 2019
622019
In vivo labeling reveals continuous trafficking of TCF-1+ T cells between tumor and lymphoid tissue
Z Li, ZK Tuong, I Dean, C Willis, F Gaspal, R Fiancette, S Idris, B Kennedy, ...
Journal of Experimental Medicine 219 (6), e20210749, 2022
532022
Pol II promoter prediction using characteristic 4-mer motifs: a machine learning approach
F Anwar, SM Baker, T Jabid, M Mehedi Hasan, M Shoyaib, H Khan, ...
BMC bioinformatics 9, 1-8, 2008
532008
Reciprocal transcription factor networks govern tissue-resident ILC3 subset function and identity
R Fiancette, CM Finlay, C Willis, SL Bevington, J Soley, STH Ng, ...
Nature immunology 22 (10), 1245-1255, 2021
512021
ZIC3 controls the transition from naive to primed pluripotency
SH Yang, M Andrabi, R Biss, SM Baker, M Iqbal, AD Sharrocks
Cell Reports 27 (11), 3215-3227. e6, 2019
452019
Targeting the IL33–NLRP3 axis improves therapy for experimental cerebral malaria
P Strangward, MJ Haley, MG Albornoz, J Barrington, T Shaw, R Dookie, ...
Proceedings of the National Academy of Sciences 115 (28), 7404-7409, 2018
442018
Macrothrombocytosis in cavalier King Charles spaniels.
SJ Brown, KW Simpson, S Baker, MA Spagnoletti, CM Elwood
The Veterinary Record 135 (12), 281-283, 1994
431994
Murine AGM single-cell profiling identifies a continuum of hemogenic endothelium differentiation marked by ACE
MZH Fadlullah, WH Neo, M Lie-A-Ling, R Thambyrajah, R Patel, R Mevel, ...
Blood, The Journal of the American Society of Hematology 139 (3), 343-356, 2022
322022
HOX paralogs selectively convert binding of ubiquitous transcription factors into tissue-specific patterns of enhancer activation
L Bridoux, P Zarrineh, J Mallen, M Phuycharoen, V Latorre, F Ladam, ...
PLoS genetics 16 (12), e1009162, 2020
242020
Kidney organoids recapitulate human basement membrane assembly in health and disease
MRPT Morais, P Tian, C Lawless, S Murtuza-Baker, L Hopkinson, ...
Elife 11, e73486, 2022
232022
Respectful modeling: addressing uncertainty in dynamic system models for molecular biology
A Tsigkinopoulou, SM Baker, R Breitling
Trends in biotechnology 35 (6), 518-529, 2017
212017
A unified framework for estimating parameters of kinetic biological models
SM Baker, CH Poskar, F Schreiber, BH Junker
BMC bioinformatics 16, 1-21, 2015
212015
An improved constraint filtering technique for inferring hidden states and parameters of a biological model
S Murtuza Baker, CH Poskar, F Schreiber, BH Junker
Bioinformatics 29 (8), 1052-1059, 2013
202013
Chronic myelomonocytic leukaemia stem cell transcriptomes anticipate disease morphology and outcome
DH Wiseman, SM Baker, AV Dongre, K Gurashi, JA Storer, ...
EBioMedicine 58, 2020
192020
T helper 2 cells control monocyte to tissue-resident macrophage differentiation during nematode infection of the pleural cavity
CM Finlay, JE Parkinson, L Zhang, BHK Chan, J Ajendra, A Chenery, ...
Immunity 56 (5), 1064-1081. e10, 2023
172023
Unscented Kalman filter with parameter identifiability analysis for the estimation of multiple parameters in kinetic models
SM Baker, CH Poskar, BH Junker
EURASIP Journal on Bioinformatics and Systems Biology 2011, 1-8, 2011
172011
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Articles 1–20