| An integrated encyclopedia of DNA elements in the human genome ENCODE Project Consortium Nature 489 (7414), 57, 2012 | 11487 | 2012 |
| Landscape of transcription in human cells S Djebali, CA Davis, A Merkel, A Dobin, T Lassmann, A Mortazavi, ... Nature 489 (7414), 101-108, 2012 | 3904 | 2012 |
| The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression T Derrien, R Johnson, G Bussotti, A Tanzer, S Djebali, H Tilgner, ... Genome research 22 (9), 1775-1789, 2012 | 3691 | 2012 |
| The human transcriptome across tissues and individuals M Melé, PG Ferreira, F Reverter, DS DeLuca, J Monlong, M Sammeth, ... Science 348 (6235), 660-665, 2015 | 833 | 2015 |
| GENCODE reference annotation for the human and mouse genomes A Frankish, M Diekhans, AM Ferreira, R Johnson, I Jungreis, J Loveland, ... Nucleic acids research 47 (D1), D766-D773, 2019 | 709 | 2019 |
| Human long non‐coding RNAs promote pluripotency and neuronal differentiation by association with chromatin modifiers and transcription factors SY Ng, R Johnson, LW Stanton The EMBO journal 31 (3), 522-533, 2012 | 470 | 2012 |
| Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs H Tilgner, DG Knowles, R Johnson, CA Davis, S Chakrabortty, S Djebali, ... Genome research 22 (9), 1616-1625, 2012 | 390 | 2012 |
| A microRNA-based gene dysregulation pathway in Huntington's disease R Johnson, C Zuccato, ND Belyaev, DJ Guest, E Cattaneo, NJ Buckley Neurobiology of disease 29 (3), 438-445, 2008 | 354 | 2008 |
| Genome-wide computational identification and manual annotation of human long noncoding RNA genes H Jia, M Osak, GK Bogu, LW Stanton, R Johnson, L Lipovich Rna 16 (8), 1478-1487, 2010 | 343 | 2010 |
| Long non-coding RNAs in Huntington's disease neurodegeneration R Johnson Neurobiology of disease 46 (2), 245-254, 2012 | 315 | 2012 |
| Pan-cancer analysis of whole genomes I The, TPCA of Whole, Genomes Consortium Nature 578 (7793), 82, 2020 | 289 | 2020 |
| MacroRNA underdogs in a microRNA world: evolutionary, regulatory, and biomedical significance of mammalian long non-protein-coding RNA L Lipovich, R Johnson, CY Lin Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms 1799 (9), 597-615, 2010 | 222 | 2010 |
| Genome-wide profiling of the cardiac transcriptome after myocardial infarction identifies novel heart-specific long non-coding RNAs S Ounzain, R Micheletti, T Beckmann, B Schroen, M Alexanian, I Pezzuto, ... European heart journal 36 (6), 353-368, 2015 | 218 | 2015 |
| The RIDL hypothesis: transposable elements as functional domains of long noncoding RNAs R Johnson, R Guigó Rna 20 (7), 959-976, 2014 | 200 | 2014 |
| REST regulates distinct transcriptional networks in embryonic and neural stem cells R Johnson, CH Teh, G Kunarso, KY Wong, G Srinivasan, ML Cooper, ... PLoS Biol 6 (10), e256, 2008 | 197 | 2008 |
| Transcriptome characterization by RNA sequencing identifies a major molecular and clinical subdivision in chronic lymphocytic leukemia PG Ferreira, P Jares, D Rico, G Gómez-López, A Martínez-Trillos, ... Genome research 24 (2), 212-226, 2014 | 182 | 2014 |
| Towards a complete map of the human long non-coding RNA transcriptome B Uszczynska-Ratajczak, J Lagarde, A Frankish, R Guigó, R Johnson Nature Reviews Genetics 19 (9), 535-548, 2018 | 180 | 2018 |
| Distinct profiles of REST interactions with its target genes at different stages of neuronal development YM Sun, DJ Greenway, R Johnson, M Street, ND Belyaev, J Deuchars, ... Molecular biology of the cell 16 (12), 5630-5638, 2005 | 179 | 2005 |
| CARMEN, a human super enhancer-associated long noncoding RNA controlling cardiac specification, differentiation and homeostasis S Ounzain, R Micheletti, C Arnan, I Plaisance, D Cecchi, B Schroen, ... Journal of molecular and cellular cardiology 89, 98-112, 2015 | 148 | 2015 |
| Identification of the REST regulon reveals extensive transposable element-mediated binding site duplication R Johnson, RJ Gamblin, L Ooi, AW Bruce, IJ Donaldson, DR Westhead, ... Nucleic acids research 34 (14), 3862-3877, 2006 | 135 | 2006 |
Roderic GuigoProfessor of Bioinformatics, Center for Genomic Regulation, Universitat Pompeu FabraVerified email at crg.cat
