Marcel H Schulz

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Martin VingronMax-Planck-Institut für molekulare GenetikVerified email at molgen.mpg.de
Peter RobinsonProfessor of Computational Biology, The Jackson Laboratory for Genomic MedicineVerified email at jax.org
Sebastian BauerVerified email at sebastianbauer.info
Hugues RichardRobert Koch Institute (Researcher) / Sorbonne University (Ass. Prof., on leave)Verified email at upmc.fr
Sebastian KöhlerSenior Information Architect, Ada Health; Member of Monarch InitiativeVerified email at ada.com
Florian SchmidtGenome Institute of Singapore, A*STARVerified email at mmci.uni-saarland.de
Ziv Bar-JosephProfessor of Computational Biology and Machine Learning, School of Computer Science, Carnegie Mellon UniversityVerified email at andrew.cmu.edu
Markus ListBig Data in BioMedicine, Chair of Experimental Bioinformatics, TUM School of Life SciencesVerified email at wzw.tum.de
Martin SimonProfessor Molecular Cell BiologyVerified email at uni-wuppertal.de
Kai YeXi'an Jiaotong UniversityVerified email at xjtu.edu.cn
David WeeseD4L data4life gGmbHVerified email at data4life.care
Ewan BirneyDirector, EMBL-EBIVerified email at ebi.ac.uk
Daniel ZerbinoMosaic TherapeuticsVerified email at mosaic-tx.com
Jörn WalterProfessor of Genetics & Epigenetics, Saarland UniveristyVerified email at mx.uni-saarland.de
Knut ReinertFU Berlin / MPI MolgenVerified email at fu-berlin.de
Jonathan GökeGenome Institute of SingaporeVerified email at gis.a-star.edu.sg
Prof. Dr. med., Dipl. Phys. Peter KrawitzInstitute for Genomic Statistics and BioinformaticsVerified email at uni-bonn.de
Shan ZhongGSKVerified email at gsk.com
Anthony GitterAssistant Professor, University of Wisconsin-Madison; Morgridge Institute for ResearchVerified email at biostat.wisc.edu
Jason ErnstAssociate Professor, University of California, Los AngelesVerified email at ucla.edu

Marcel H Schulz

Professor of Computational Biology, Goethe University Frankfurt, Germany

Verified email at em.uni-frankfurt.de - Homepage

Epigenomics Data Science Gene Regulation Single Cell Analysis Machine Learning Computer Science


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Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads K Ye, MH Schulz, Q Long, R Apweiler, Z Ning Bioinformatics 25 (21), 2865-2871, 2009	1784	2009
Oases: Robust de novo RNA-seq assembly across the dynamic range of expression levels MH Schulz, DR Zerbino, M Vingron, E Birney Bioinformatics, 2012	1458	2012
A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome M Sultan, MH Schulz, H Richard, A Magen, A Klingenhoff, M Scherf, ... Science 321 (5891), 956-960, 2008	1435	2008
Assessment of transcript reconstruction methods for RNA-seq T Steijger, JF Abril, PG Engström, F Kokocinski, TJ Hubbard, R Guigó, ... Nature methods 10 (12), 1177-1184, 2013	559	2013
Clinical diagnostics in human genetics with semantic similarity searches in ontologies S Köhler, MH Schulz, P Krawitz, S Bauer, S Dölken, CE Ott, C Mundlos, ... The American Journal of Human Genetics 85 (4), 457-464, 2009	400	2009
The International Human Epigenome Consortium: A Blueprint for Scientific Collaboration and Discovery HG Stunnenberg, M Hirst, International Human Epigenome Consortium Cell 167 (5), 1145-1149, 2016	309	2016
Prediction of alternative isoforms from exon expression levels in RNA-Seq experiments H Richard, MH Schulz, M Sultan, A Nürnberger, S Schrinner, D Balzereit, ... Nucleic Acids Research 38 (10), e112-e112, 2010	195	2010
Mapping translocation breakpoints by next-generation sequencing W Chen, V Kalscheuer, A Tzschach, C Menzel, R Ullmann, MH Schulz, ... Genome research 18 (7), 1143-1149, 2008	169	2008
Epigenomic Profiling of Human CD4+ T Cells Supports a Linear Differentiation Model and Highlights Molecular Regulators of Memory Development P Durek, K Nordström, G Gasparoni, A Salhab, C Kressler, M de Almeida, ... Immunity 45 (5), 1148-1161, 2016	132	2016
Identification of transcription factor binding sites using ATAC-seq Z Li, MH Schulz, T Look, M Begemann, M Zenke, IG Costa Genome biology 20 (1), 1-21, 2019	128	2019
DREM 2.0: Improved reconstruction of dynamic regulatory networks from time-series expression data MH Schulz, WE Devanny, A Gitter, S Zhong, J Ernst, Z Bar-Joseph BMC Systems Biology 6 (1), 104, 2012	109	2012
Probabilistic error correction for RNA sequencing HS Le, MH Schulz, BM McCauley, VF Hinman, Z Bar-Joseph Nucleic acids research 41 (10), e109-e109, 2013	92	2013
Detecting genomic indel variants with exact breakpoints in single-and paired-end sequencing data using SplazerS AK Emde, MH Schulz, D Weese, R Sun, M Vingron, VM Kalscheuer, ... Bioinformatics, 2012	75	2012
Combining transcription factor binding affinities with open-chromatin data for accurate gene expression prediction F Schmidt, N Gasparoni, G Gasparoni, K Gianmoena, C Cadenas, ... Nucleic acids research 45 (1), 54-66, 2017	71	2017
Fiona: a parallel and automatic strategy for read error correction MH Schulz, D Weese, M Holtgrewe, V Dimitrova, S Niu, K Reinert, ... Bioinformatics 30 (17), i356-i363, 2014	71	2014
Reconstructing dynamic microRNA-regulated interaction networks MH Schulz, KV Pandit, CLL Cardenas, N Ambalavanan, N Kaminski, ... Proceedings of the National Academy of Sciences 110 (39), 15686-15691, 2013	71	2013
DECOD: fast and accurate discriminative DNA motif finding P Huggins, S Zhong, I Shiff, R Beckerman, O Laptenko, C Prives, ... Bioinformatics 27 (17), 2361-2367, 2011	60	2011
Bayesian Ontology Querying for Accurate and Noise-Tolerant Semantic Searches S Bauer, S Köhler, MH Schulz, PN Robinson Bioinformatics, 2012	55	2012
Estimation of Pairwise Sequence Similarity of Mammalian Enhancers with Word Neighbourhood Counts J Göke, MH Schulz, J Lasserre, M Vingron Bioinformatics, 2012	52	2012
Methods for searching with semantic similarity scores in one or more ontologies PN Robinson, MH Schulz, S Bauer, S Köhler US Patent 9,002,857, 2015	39	2015

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