Marcel H Schulz

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	All	Since 2016
Citations	7419	4231
h-index	24	20
i10-index	40	34

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2008200920102011201220132014201520162017201820192020202141 145 233 280 385 593 700 752 746 786 802 845 893 146

Co-authors

Martin VingronMax-Planck-Institut für molekulare GenetikVerified email at molgen.mpg.de
Peter RobinsonProfessor of Computational Biology, The Jackson Laboratory for Genomic MedicineVerified email at jax.org
Sebastian BauerVerified email at sebastianbauer.info
Hugues RichardRobert Koch Institute (Researcher) / Sorbonne University (Ass. Prof., on leave)Verified email at upmc.fr
Sebastian KöhlerSenior Information Architect, Ada Health; Member of Monarch InitiativeVerified email at ada.com
Ziv Bar-JosephProfessor of Computational Biology and Machine Learning, School of Computer Science, Carnegie Mellon UniversityVerified email at andrew.cmu.edu
Martin SimonProfessor Molecular Cell BiologyVerified email at uni-wuppertal.de
Markus ListBig Data in BioMedicine, Chair of Experimental Bioinformatics, TUM School of Life SciencesVerified email at wzw.tum.de
David WeeseHealth Care, SAP Innovation Center PotsdamVerified email at sap.com
Kai YeXi'an Jiaotong UniversityVerified email at xjtu.edu.cn
Ewan BirneyDirector, EMBL-EBIVerified email at ebi.ac.uk
Daniel ZerbinoEMBL-EBIVerified email at ebi.ac.uk
Knut ReinertFU Berlin / MPI MolgenVerified email at fu-berlin.de
Jonathan GökeGenome Institute of SingaporeVerified email at gis.a-star.edu.sg
Prof. Dr. med., Dipl. Phys. Peter KrawitzInstitute for Genomic Statistics and BioinformaticsVerified email at uni-bonn.de
Shan ZhongGSKVerified email at gsk.com
Anthony GitterAssistant Professor, University of Wisconsin-Madison; Morgridge Institute for ResearchVerified email at biostat.wisc.edu
Jason ErnstAssociate Professor, University of California, Los AngelesVerified email at ucla.edu
Christian RödelspergerMax Planck Institute for Developmental BiologyVerified email at roedelsperger.de
Ruping SunAssistant Professor, University of Minnesota Twin CitiesVerified email at umn.edu

Marcel H Schulz

Professor of Computational Biology, Goethe University Frankfurt, Germany

Verified email at em.uni-frankfurt.de - Homepage

Epigenomics Data Science Gene Regulation Single Cell Analysis Machine Learning Computer Science


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Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads K Ye, MH Schulz, Q Long, R Apweiler, Z Ning Bioinformatics 25 (21), 2865-2871, 2009	1684	2009
A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome M Sultan, MH Schulz, H Richard, A Magen, A Klingenhoff, M Scherf, ... Science 321 (5891), 956-960, 2008	1413	2008
Oases: Robust de novo RNA-seq assembly across the dynamic range of expression levels MH Schulz, DR Zerbino, M Vingron, E Birney Bioinformatics, 2012	1387	2012
Assessment of transcript reconstruction methods for RNA-seq T Steijger, JF Abril, PG Engström, F Kokocinski, TJ Hubbard, R Guigó, ... Nature methods 10 (12), 1177-1184, 2013	534	2013
Clinical diagnostics in human genetics with semantic similarity searches in ontologies S Köhler, MH Schulz, P Krawitz, S Bauer, S Dölken, CE Ott, C Mundlos, ... The American Journal of Human Genetics 85 (4), 457-464, 2009	380	2009
The International Human Epigenome Consortium: A Blueprint for Scientific Collaboration and Discovery HG Stunnenberg, M Hirst, International Human Epigenome Consortium Cell 167 (5), 1145-1149, 2016	271	2016
Prediction of alternative isoforms from exon expression levels in RNA-Seq experiments H Richard, MH Schulz, M Sultan, A Nürnberger, S Schrinner, D Balzereit, ... Nucleic Acids Research 38 (10), e112-e112, 2010	193	2010
Mapping translocation breakpoints by next-generation sequencing W Chen, V Kalscheuer, A Tzschach, C Menzel, R Ullmann, MH Schulz, ... Genome research 18 (7), 1143-1149, 2008	163	2008
Epigenomic Profiling of Human CD4+ T Cells Supports a Linear Differentiation Model and Highlights Molecular Regulators of Memory Development P Durek, K Nordström, G Gasparoni, A Salhab, C Kressler, M de Almeida, ... Immunity 45 (5), 1148-1161, 2016	115	2016
Identification of transcription factor binding sites using ATAC-seq Z Li, MH Schulz, T Look, M Begemann, M Zenke, IG Costa Genome biology 20 (1), 1-21, 2019	104	2019
DREM 2.0: Improved reconstruction of dynamic regulatory networks from time-series expression data MH Schulz, WE Devanny, A Gitter, S Zhong, J Ernst, Z Bar-Joseph BMC Systems Biology 6 (1), 104, 2012	104	2012
Probabilistic error correction for RNA sequencing HS Le, MH Schulz, BM McCauley, VF Hinman, Z Bar-Joseph Nucleic acids research 41 (10), e109-e109, 2013	87	2013
Detecting genomic indel variants with exact breakpoints in single-and paired-end sequencing data using SplazerS AK Emde, MH Schulz, D Weese, R Sun, M Vingron, VM Kalscheuer, ... Bioinformatics, 2012	72	2012
Fiona: a parallel and automatic strategy for read error correction MH Schulz, D Weese, M Holtgrewe, V Dimitrova, S Niu, K Reinert, ... Bioinformatics 30 (17), i356-i363, 2014	70	2014
Reconstructing dynamic microRNA-regulated interaction networks MH Schulz, KV Pandit, CLL Cardenas, N Ambalavanan, N Kaminski, ... Proceedings of the National Academy of Sciences 110 (39), 15686-15691, 2013	67	2013
Combining transcription factor binding affinities with open-chromatin data for accurate gene expression prediction F Schmidt, N Gasparoni, G Gasparoni, K Gianmoena, C Cadenas, ... Nucleic acids research 45 (1), 54-66, 2017	66	2017
DECOD: fast and accurate discriminative DNA motif finding P Huggins, S Zhong, I Shiff, R Beckerman, O Laptenko, C Prives, ... Bioinformatics 27 (17), 2361-2367, 2011	59	2011
Bayesian Ontology Querying for Accurate and Noise-Tolerant Semantic Searches S Bauer, S Köhler, MH Schulz, PN Robinson Bioinformatics, 2012	53	2012
Estimation of Pairwise Sequence Similarity of Mammalian Enhancers with Word Neighbourhood Counts J Göke, MH Schulz, J Lasserre, M Vingron Bioinformatics, 2012	52	2012
Fast and adaptive variable order Markov chain construction MH Schulz, D Weese, T Rausch, A Döring, K Reinert, M Vingron International Workshop on Algorithms in Bioinformatics, 306-317, 2008	38	2008

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