Amarda Shehu

Cited by

	All	Since 2016
Citations	2299	1402
h-index	28	21
i10-index	66	43

340

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255

2008200920102011201220132014201520162017201820192020202126 20 42 63 130 235 127 198 248 186 236 329 336 66

Co-authors

Kevin MolloyAssistant Professor, Department of Computer Science, James Madison UniversityVerified email at jmu.edu
Daniel VeltriNational Institute of Allergy and Infectious Diseases, NIHVerified email at nih.gov
Uday kamathGeorge Mason UniversityVerified email at gmu.edu
Nasrin AkhterAssistant Professor of Teaching, University at BuffaloVerified email at buffalo.edu
Irina HashmiGeorge Mason UniversityVerified email at gmu.edu
Lydia E. KavrakiRice UniversityVerified email at rice.edu
Cecilia ClementiProfessor of Physics, Freie Universität BerlinVerified email at fu-berlin.de
Erion PlakuAssociate Professor, Department of Computer Science, George Mason UniversityVerified email at gmu.edu
Nadine KabbaniGeorge Mason UniversityVerified email at gmu.edu
Rudy ClausenGeorge Mason UniversityVerified email at gmu.edu
Emmanuel SapinGeorge Mason UniversityVerified email at exeter.ac.uk
Ruth NussinovProfessor and Senior Principal Investigator, National Cancer Institute and Tel Aviv UniversityVerified email at post.tau.ac.il
Daniel BarbaraProfessor of Computer Science, George Mason UniversityVerified email at gmu.edu
Ahmed Bin ZamanPhD Candidate, George Mason UniversityVerified email at gmu.edu
Murat OzKuwait University, Health Science CenterVerified email at hsc.edu.kw
Bassem SadekAssociate Professor, Department of Pharmacology and Therapeutics, United Arab Emirates UniversityVerified email at uaeu.ac.ae
Shuba, YaroslavBogomoletz Institute of PhysiologyVerified email at biph.kiev.ua
Buyong MaSchool of Pharmacy, Shanghai Jiaotong UniversityVerified email at sjtu.edu.cn
Bahar Akbal-DelibasAsst. Prof., Kadir Has UniversityVerified email at cs.umb.edu
Zahra RajabiPhD Candidate @GMU - Machine Learning Scientist @AdobeVerified email at gmu.edu

Amarda Shehu

Professor of Computer Science, George Mason University

Verified email at gmu.edu - Homepage

Computational Biology Artificial Intelligence Robotics Biophysics Bioinformatics


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Principles and overview of sampling methods for modeling macromolecular structure and dynamics T Maximova, R Moffatt, B Ma, R Nussinov, A Shehu PLoS computational biology 12 (4), e1004619, 2016	161	2016
Modeling protein conformational ensembles: from missing loops to equilibrium fluctuations A Shehu, C Clementi, LE Kavraki Proteins: Structure, Function, and Bioinformatics 65 (1), 164-179, 2006	90	2006
Deep learning improves antimicrobial peptide recognition D Veltri, U Kamath, A Shehu Bioinformatics 34 (16), 2740-2747, 2018	85	2018
Multiscale characterization of protein conformational ensembles A Shehu, LE Kavraki, C Clementi Proteins: Structure, Function, and Bioinformatics 76 (4), 837-851, 2009	76	2009
Guiding the search for native-like protein conformations with an ab-initio tree-based exploration A Shehu, B Olson The International Journal of Robotics Research 29 (8), 1106-1127, 2010	70	2010
Are nicotinic acetylcholine receptors coupled to G proteins? N Kabbani, JC Nordman, BA Corgiat, DP Veltri, A Shehu, VA Seymour, ... Bioessays 35 (12), 1025-1034, 2013	69	2013
Multi-objective stochastic search for sampling local minima in the protein energy surface B Olson, A Shehu Proceedings of the International Conference on Bioinformatics, Computational …, 2013	53	2013
Menthol binding and inhibition of α7-nicotinic acetylcholine receptors A Ashoor, JC Nordman, D Veltri, KHS Yang, L Al Kury, Y Shuba, ... PloS one 8 (7), e67674, 2013	51	2013
Mapping the conformation space of wildtype and mutant H-Ras with a memetic, cellular, and multiscale evolutionary algorithm R Clausen, B Ma, R Nussinov, A Shehu PLoS Comput Biol 11 (9), e1004470, 2015	50	2015
Effective automated feature construction and selection for classification of biological sequences U Kamath, K De Jong, A Shehu PloS one 9 (7), e99982, 2014	50	2014
Probabilistic search and optimization for protein energy landscapes A Shehu, S Aluru, A Singh Handbook of Computational Molecular Biology, 2013	48	2013
Restriction versus guidance in protein structure prediction JA Hegler, J Lätzer, A Shehu, C Clementi, PG Wolynes Proceedings of the National Academy of Sciences 106 (36), 15302-15307, 2009	46	2009
Evolutionary-inspired probabilistic search for enhancing sampling of local minima in the protein energy surface BS Olson, A Shehu Proteome Science 10 (1), 1-16, 2012	44	2012
Basin Hopping as a General and Versatile Optimization Framework for the Characterization of Biological Macromolecules. B Olson, I Hashmi, K Molloy, A Shehu Advances in Artificial Intelligence (16877470), 2012	44	2012
Probabilistic search and energy guidance for biased decoy sampling in ab initio protein structure prediction K Molloy, S Saleh, A Shehu IEEE/ACM transactions on computational biology and bioinformatics 10 (5 …, 2013	43	2013
On the characterization of protein native state ensembles A Shehu, LE Kavraki, C Clementi Biophysical Journal 92 (5), 1503-1511, 2007	42	2007
Off-lattice protein structure prediction with homologous crossover B Olson, K De Jong, A Shehu Proceedings of the 15th annual conference on Genetic and evolutionary …, 2013	40	2013
An evolutionary algorithm approach for feature generation from sequence data and its application to DNA splice site prediction U Kamath, J Compton, R Islamaj-Doğan, KA De Jong, A Shehu IEEE/ACM Transactions on Computational Biology and Bioinformatics 9 (5 …, 2012	40	2012
Modeling structures and motions of loops in protein molecules A Shehu, LE Kavraki Entropy 14 (2), 252-290, 2012	38	2012
In search of the protein native state with a probabilistic sampling approach B Olson, K Molloy, A Shehu Journal of Bioinformatics and Computational Biology 9 (03), 383-398, 2011	38	2011

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