| SciPy 1.0: fundamental algorithms for scientific computing in Python P Virtanen, R Gommers, TE Oliphant, M Haberland, T Reddy, ... Nature methods 17 (3), 261-272, 2020 | 11963 | 2020 |
| scikit-image: image processing in Python S Van der Walt, JL Schönberger, J Nunez-Iglesias, F Boulogne, ... PeerJ 2, e453, 2014 | 3180 | 2014 |
| Joint genome-wide profiling of miRNA and mRNA expression in Alzheimer's disease cortex reveals altered miRNA regulation J Nunez-Iglesias, CC Liu, TE Morgan, CE Finch, XJ Zhou PloS one 5 (2), e8898, 2010 | 350 | 2010 |
| Synaptic circuits and their variations within different columns in the visual system of Drosophila S Takemura, CS Xu, Z Lu, PK Rivlin, T Parag, DJ Olbris, S Plaza, T Zhao, ... Proceedings of the National Academy of Sciences 112 (44), 13711-13716, 2015 | 202 | 2015 |
| Functional annotation and network reconstruction through cross-platform integration of microarray data XJ Zhou, MCJ Kao, H Huang, A Wong, J Nunez-Iglesias, M Primig, ... Nature biotechnology 23 (2), 238-243, 2005 | 183 | 2005 |
| Machine learning of hierarchical clustering to segment 2D and 3D images J Nunez-Iglesias, R Kennedy, T Parag, J Shi, DB Chklovskii PloS one 8 (8), e71715, 2013 | 143 | 2013 |
| The scikit-image contributors S van der Walt, JL Schönberger, J Nunez-Iglesias, F Boulogne, ... Scikit-image: image processing in Python. PeerJ 2, e453, 2014 | 91 | 2014 |
| An integrative approach to characterize disease-specific pathways and their coordination: a case study in cancer M Xu, MCJ Kao, J Nunez-Iglesias, JR Nevins, M West, XJ Zhou BMC genomics 9 (1), 1-12, 2008 | 64 | 2008 |
| Gene Aging Nexus: a web database and data mining platform for microarray data on aging F Pan, CH Chiu, S Pulapura, MR Mehan, J Nunez-Iglesias, K Zhang, ... Nucleic acids research 35 (suppl_1), D756-D759, 2007 | 56 | 2007 |
| Graph-based active learning of agglomeration (GALA): a Python library to segment 2D and 3D neuroimages J Nunez-Iglesias, R Kennedy, SM Plaza, A Chakraborty, WT Katz Frontiers in neuroinformatics 8, 34, 2014 | 54 | 2014 |
| scikitimage: image processing in Python. PeerJ. 2014; 2: e453 S Van der Walt, JL Schönberger, J Nunez-Iglesias, F Boulogne, ... PubMed Abstract| Publisher Full Text| Free Full Text, 2014 | 49 | 2014 |
| Synaptic Cleft Segmentation in Non-isotropic Volume Electron Microscopy of the Complete Drosophila Brain L Heinrich, J Funke, C Pape, J Nunez-Iglesias, S Saalfeld International Conference on Medical Image Computing and Computer-Assisted …, 2018 | 46 | 2018 |
| Recruitment of the adaptor protein 2 complex by the human immunodeficiency virus type 2 envelope protein is necessary for high levels of virus release B Noble, P Abada, J Nunez-Iglesias, PM Cannon Journal of virology 80 (6), 2924-2932, 2006 | 44 | 2006 |
| napari/napari: 0.3. 5 N Sofroniew, K Evans, T Lambert, J Nunez-Iglesias, AC Solak, ... Zenodo https://doi. org/10.5281/zenodo 3900158, 2020 | 35 | 2020 |
| A new Python library to analyse skeleton images confirms malaria parasite remodelling of the red blood cell membrane skeleton J Nunez-Iglesias, AJ Blanch, O Looker, MW Dixon, L Tilley PeerJ 6, e4312, 2018 | 29 | 2018 |
| Analyzing microtomography data with Python and the scikit-image library E Gouillart, J Nunez-Iglesias, S Van Der Walt Advanced structural and chemical imaging 2 (1), 1-11, 2016 | 29 | 2016 |
| The knob protein KAHRP assembles into a ring-shaped structure that underpins virulence complex assembly O Looker, AJ Blanch, B Liu, J Nunez-Iglesias, PJ McMillan, L Tilley, ... PLoS pathogens 15 (5), e1007761, 2019 | 25 | 2019 |
| Integrative Array Analyzer: a software package for analysis of cross-platform and cross-species microarray data F Pan, K Kamath, K Zhang, S Pulapura, A Achar, J Nunez-Iglesias, ... Bioinformatics 22 (13), 1665-1667, 2006 | 22 | 2006 |
| An integrative modular approach to systematically predict gene-phenotype associations MR Mehan, J Nunez-Iglesias, C Dai, MS Waterman, XJ Zhou BMC bioinformatics 11 (1), 1-12, 2010 | 20 | 2010 |
| Electron microscopy reconstruction of brain structure using sparse representations over learned dictionaries T Hu, J Nunez-Iglesias, S Vitaladevuni, L Scheffer, S Xu, M Bolorizadeh, ... IEEE Transactions on Medical Imaging 32 (12), 2179-2188, 2013 | 19* | 2013 |
