|Gene-expression profiles and transcriptional regulatory pathways that underlie the identity and diversity of mouse tissue macrophages|
EL Gautier, T Shay, J Miller, M Greter, C Jakubzick, S Ivanov, J Helft, ...
Nature immunology 13 (11), 1118-1128, 2012
|Variation in the human immune system is largely driven by non-heritable influences|
P Brodin, V Jojic, T Gao, S Bhattacharya, CJL Angel, D Furman, ...
Cell 160 (1-2), 37-47, 2015
|Deciphering the transcriptional network of the dendritic cell lineage|
JC Miller, BD Brown, T Shay, EL Gautier, V Jojic, A Cohain, G Pandey, ...
Nature immunology 13 (9), 888-899, 2012
|Systems analysis of sex differences reveals an immunosuppressive role for testosterone in the response to influenza vaccination|
D Furman, BP Hejblum, N Simon, V Jojic, CL Dekker, R Thiébaut, ...
Proceedings of the National Academy of Sciences 111 (2), 869-874, 2014
|Transcriptional profiling of stroma from inflamed and resting lymph nodes defines immunological hallmarks|
D Malhotra, AL Fletcher, J Astarita, V Lukacs-Kornek, P Tayalia, ...
Nature immunology 13 (5), 499-510, 2012
|Transcriptional insights into the CD8+ T cell response to infection and memory T cell formation|
JA Best, DA Blair, J Knell, E Yang, V Mayya, A Doedens, ML Dustin, ...
Nature immunology 14 (4), 404-412, 2013
|A panoramic view of yeast noncoding RNA processing|
WT Peng, MD Robinson, S Mnaimneh, NJ Krogan, G Cagney, Q Morris, ...
Cell 113 (7), 919-933, 2003
|Conservation and divergence in the transcriptional programs of the human and mouse immune systems|
T Shay, V Jojic, O Zuk, K Rothamel, D Puyraimond-Zemmour, T Feng, ...
Proceedings of the National Academy of Sciences 110 (8), 2946-2951, 2013
|Cytomegalovirus infection enhances the immune response to influenza|
D Furman, V Jojic, S Sharma, SS Shen-Orr, CJL Angel, ...
Science translational medicine 7 (281), 281ra43-281ra43, 2015
|Molecular definition of the identity and activation of natural killer cells|
NA Bezman, CC Kim, JC Sun, G Min-Oo, DW Hendricks, Y Kamimura, ...
Nature immunology 13 (10), 1000-1009, 2012
|The transcriptional landscape of αβ T cell differentiation|
M Mingueneau, T Kreslavsky, D Gray, T Heng, R Cruse, J Ericson, ...
Nature immunology 14 (6), 619-632, 2013
|Expression of specific inflammasome gene modules stratifies older individuals into two extreme clinical and immunological states|
D Furman, J Chang, L Lartigue, CR Bolen, F Haddad, B Gaudilliere, ...
Nature medicine 23 (2), 174-184, 2017
|Intrathymic programming of effector fates in three molecularly distinct γδ T cell subtypes|
K Narayan, KE Sylvia, N Malhotra, CC Yin, G Martens, T Vallerskog, ...
Nature immunology 13 (5), 511-518, 2012
|Identification of transcriptional regulators in the mouse immune system|
V Jojic, T Shay, K Sylvia, O Zuk, X Sun, J Kang, A Regev, D Koller
Nature immunology 14 (6), 633-643, 2013
|Apoptosis and other immune biomarkers predict influenza vaccine responsiveness|
D Furman, V Jojic, B Kidd, S Shen‐Orr, J Price, J Jarrell, T Tse, H Huang, ...
Molecular systems biology 9 (1), 659, 2013
|Research in computational molecular biology|
J Huang, Q Morris, B Frey
Detecting microRNA targets by linking sequence, microRNA and gene expression …, 2006
|Genovo: de novo assembly for metagenomes|
J Laserson, V Jojic, D Koller
Journal of Computational Biology 18 (3), 429-443, 2011
|Accelerated dual decomposition for MAP inference|
V Jojic, S Gould, D Koller
|Design of synthetic bacterial communities for predictable plant phenotypes|
S Herrera Paredes, T Gao, TF Law, OM Finkel, T Mucyn, PJPL Teixeira, ...
PLoS biology 16 (2), e2003962, 2018
|Shared and distinct transcriptional programs underlie the hybrid nature of i NKT cells|
NR Cohen, PJ Brennan, T Shay, GF Watts, M Brigl, J Kang, MB Brenner
Nature immunology 14 (1), 90-99, 2013