Séamus Holden

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Achillefs KapanidisProfessor in Biological Physics, University of OxfordVerified email at physics.ox.ac.uk
Suliana ManleyProfessor of Physics, EPFLVerified email at epfl.ch
Mike HeilemannProfessor of Physical Chemistry, Goethe-University Frankfurt/M., GermanyVerified email at chemie.uni-frankfurt.de
Ricardo HenriquesPI at ITQB NOVA and Hon. Prof. at UCL (LMCB). Previously PI at Crick, IGC and GIMMVerified email at itqb.unl.pt
Cees DekkerKavli Institute of Nanoscience, Delft University of Technology, The NetherlandsVerified email at tudelft.nl
Thomas PengoDirector of Research Informatics, U of MinnesotaVerified email at umn.edu
Michael UnserProfessor, Biomedical Imaging Group, Ecole Polytechnique Fédérale de Lausanne (EPFL), SwitzerlandVerified email at epfl.ch
Kevin WhitleyNewcastle UniversityVerified email at newcastle.ac.uk
Christoph SpahnPhD, MPI for terrestrial microbiologyVerified email at mpi-marburg.mpg.de
Johannes HohlbeinAssociate Professor, Wageningen University & ResearchVerified email at wur.nl
Romain F. LaineUniversity College London, MRC-LMCBVerified email at ucl.ac.uk
Guillaume JacquemetÅbo Akademi UniversityVerified email at abo.fi
Stephan UphoffUniversity of OxfordVerified email at bioch.ox.ac.uk
Daniel SageBiomedical Imaging Group, Center for Imaging, EPFL, Lausanne, SwitzerlandVerified email at epfl.ch
Anna ArchettiPost Doct, EPFLVerified email at epfl.ch
Lina CarliniStony Brook UniversityVerified email at stonybrook.edu
Joseph Peter TorellaGraduate Student in Systems Biology, Harvard Medical SchoolVerified email at fas.harvard.edu
Thanh-an PhamEcole Polytechnique Fédérale de LausanneVerified email at epfl.ch
Yves V. BrunProfessor and Canada 150 Research Chair at the Université de MontréalVerified email at umontreal.ca
Yingjie SunHarvard UniversityVerified email at g.harvard.edu

Séamus Holden

Professor of Microbial Biophysics, University of Warwick, UK

Verified email at warwick.ac.uk - Homepage

Biophysics Bacteriology Microscopy Bacterial cell envelope


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Treadmilling by FtsZ filaments drives peptidoglycan synthesis and bacterial cell division AW Bisson-Filho, YP Hsu, GR Squyres, E Kuru, F Wu, C Jukes, Y Sun, ... Science 355 (6326), 739-743, 2017	638	2017
DAOSTORM: an algorithm for high-density super-resolution microscopy SJ Holden, S Uphoff, AN Kapanidis Nature Methods 8 (4), 279-280, 2011	525	2011
Democratising deep learning for microscopy with ZeroCostDL4Mic L von Chamier, RF Laine, J Jukkala, C Spahn, D Krentzel, E Nehme, ... Nature communications 12 (1), 2276, 2021	513*	2021
Super-resolution fight club: assessment of 2D and 3D single-molecule localization microscopy software D Sage, TA Pham, H Babcock, T Lukes, T Pengo, J Chao, R Velmurugan, ... Nature methods 16 (5), 387-395, 2019	364	2019
High throughput 3D super-resolution microscopy reveals Caulobacter crescentus in vivo Z-ring organization SJ Holden, T Pengo, KL Meibom, C Fernandez Fernandez, J Collier, ... Proceedings of the National Academy of Sciences 111 (12), 4566-4571, 2014	251	2014
Defining the Limits of Single-Molecule FRET Resolution in TIRF Microscopy SJ Holden, S Uphoff, J Hohlbein, D Yadin, L Le Reste, OJ Britton, ... Biophysical Journal 99 (9), 3102-3111, 2010	235	2010
FALCON: fast and unbiased reconstruction of high-density super-resolution microscopy data J Min, C Vonesch, H Kirshner, L Carlini, N Olivier, S Holden, S Manley, ... Scientific reports 4 (1), 4577, 2014	203	2014
Multiscale Spatial Organization of RNA Polymerase in Escherichia coli U Endesfelder, K Finan, SJ Holden, PR Cook, AN Kapanidis, ... Biophysical Journal 105 (1), 172-181, 2013	182	2013
Identifying molecular dynamics in single-molecule FRET experiments with burst variance analysis JP Torella, SJ Holden, Y Santoso, J Hohlbein, AN Kapanidis Biophysical journal 100 (6), 1568-1577, 2011	141	2011
Monitoring multiple distances within a single molecule using switchable FRET S Uphoff, SJ Holden, L Le Reste, J Periz, S van de Linde, M Heilemann, ... Nature Methods 7 (10), 831-836, 2010	130	2010
Movement dynamics of divisome proteins and PBP2x:FtsW in cells of Streptococcus pneumoniae AJ Perez, Y Cesbron, SL Shaw, J Bazan Villicana, HCT Tsui, MJ Boersma, ... Proceedings of the National Academy of Sciences 116 (8), 3211-3220, 2019	121	2019
FtsZ treadmilling is essential for Z-ring condensation and septal constriction initiation in Bacillus subtilis cell division KD Whitley, C Jukes, N Tregidgo, E Karinou, P Almada, Y Cesbron, ... Nature communications 12 (1), 2448, 2021	96	2021
DeepBacs for multi-task bacterial image analysis using open-source deep learning approaches C Spahn, E Gómez-de-Mariscal, RF Laine, PM Pereira, L von Chamier, ... Communications Biology 5 (1), 688, 2022	75	2022
PALMsiever: a tool to turn raw data into results for single-molecule localization microscopy T Pengo, SJ Holden, S Manley Bioinformatics 31 (5), 797-798, 2015	51	2015
Open microscopy in the life sciences: quo vadis? J Hohlbein, B Diederich, B Marsikova, EG Reynaud, S Holden, W Jahr, ... Nature methods 19 (9), 1020-1025, 2022	49	2022
3D high-density localization microscopy using hybrid astigmatic/biplane imaging and sparse image reconstruction J Min, SJ Holden, L Carlini, M Unser, S Manley, JC Ye Biomedical optics express 5 (11), 3935-3948, 2014	49	2014
Geometric principles underlying the proliferation of a model cell system LJ Wu, S Lee, S Park, LE Eland, A Wipat, S Holden, J Errington Nature communications 11 (1), 4149, 2020	37	2020
Modularity and determinants of a (bi-) polarization control system from free-living and obligate intracellular bacteria M Berge, S Campagne, J Mignolet, S Holden, L Theraulaz, S Manley, ... Elife 5, e20640, 2016	37	2016
Single‐Molecule DNA Biosensors for Protein and Ligand Detection K Lymperopoulos, R Crawford, JP Torella, M Heilemann, LC Hwang, ... Angewandte Chemie International Edition 49 (7), 1316-1320, 2010	35	2010
Probing the mechanistic principles of bacterial cell division with super-resolution microscopy S Holden Current opinion in microbiology 43, 84-91, 2018	32	2018

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