Rutger Hermsen

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Terence HwaDistinguished Professor and Presidential Chair, U.C. San DiegoVerified email at ucsd.edu
Hiroyuki OkanoVerified email at physics.ucsd.edu
Barrett DerisPostdoctoral Fellow, Massachusetts Institute of TechnologyVerified email at mit.edu
Sander J. TansAMOLF institute Amsterdam, Delft University of TechnologyVerified email at amolf.nl
Hilje M. DoekesAssistant professor, Wageningen University & ResearchVerified email at wur.nl
Rob J de BoerUtrecht UniversityVerified email at uu.nl
Minsu KimEmory UniversityVerified email at emory.edu
Alex GroismanUCSD, PhysicsVerified email at ucsd.edu
Michael SheinmanSevSUVerified email at sevsu.ru
Bram GerritsenYale UniversityVerified email at yale.edu
Benny ChainUCLVerified email at ucl.ac.uk
Peter de GreefUtrecht UniversityVerified email at uu.nl
James M HeatherMassachusetts General HospitalVerified email at mgh.harvard.edu
Mazlina IsmailUCL Cancer InstituteVerified email at ucl.ac.uk
Bas E. DutilhMicroverse Cluster, Friedrich Schiller University Jena | Theoretical Biology and BioinformaticsVerified email at uni-jena.de
Florian MassipResearcher at the CBIO unit, Institut Curie, Mines de Paris, U900Verified email at mines-paristech.fr
Ksenia ArkhipovaLeiden UniversityVerified email at lacdr.leidenuniv.nl
Karl KochanowskiResearcher at IRTA-CReSAVerified email at irta.cat
Sarah A. TeichmannWellcome Sanger Institute & University of CambridgeVerified email at cam.ac.uk
Benjamin TowbinSNSF Eccellenza Assistant Professor, University of BernVerified email at izb.unibe.ch

Rutger Hermsen

Utrecht University

Verified email at uu.nl - Homepage

Quantitative biology Theoretical biology Biophysics Systems biology


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The innate growth bistability and fitness landscapes of antibiotic-resistant bacteria JB Deris, M Kim, Z Zhang, H Okano, R Hermsen, A Groisman, T Hwa Science 342 (6162), 1237435, 2013	215	2013
On the rapidity of antibiotic resistance evolution facilitated by a concentration gradient R Hermsen, JB Deris, T Hwa Proceedings of the National Academy of Sciences 109 (27), 10775-10780, 2012	209	2012
Transcriptional regulation by competing transcription factor modules R Hermsen, S Tans, PR Ten Wolde PLoS computational biology 2 (12), e164, 2006	147	2006
A growth‐rate composition formula for the growth of E. coli on co‐utilized carbon substrates R Hermsen, H Okano, C You, N Werner, T Hwa Molecular systems biology 11 (4), 801, 2015	114	2015
Sources and sinks: a stochastic model of evolution in heterogeneous environments R Hermsen, T Hwa Physical review letters 105 (24), 248104, 2010	85	2010
The naive T-cell receptor repertoire has an extremely broad distribution of clone sizes PC de Greef, T Oakes, B Gerritsen, M Ismail, JM Heather, R Hermsen, ... Elife 9, e49900, 2020	84	2020
Regulation underlying hierarchical and simultaneous utilization of carbon substrates by flux sensors in Escherichia coli H Okano, R Hermsen, K Kochanowski, T Hwa Nature microbiology 5 (1), 206-215, 2020	57	2020
Speed, sensitivity, and bistability in auto-activating signaling circuits R Hermsen, DW Erickson, T Hwa PLoS computational biology 7 (11), e1002265, 2011	51	2011
Combinatorial gene regulation using auto-regulation R Hermsen, B Ursem, PR Ten Wolde PLoS computational biology 6 (6), e1000813, 2010	45	2010
Chance and necessity in chromosomal gene distributions R Hermsen, PR ten Wolde, S Teichmann Trends in Genetics 24 (5), 216-219, 2008	31	2008
Identical sequences found in distant genomes reveal frequent horizontal transfer across the bacterial domain M Sheinman, K Arkhipova, PF Arndt, BE Dutilh, R Hermsen, F Massip Elife 10, e62719, 2021	28	2021
Noise propagation in an integrated model of bacterial gene expression and growth IT Kleijn, LHJ Krah, R Hermsen PLoS computational biology 14 (10), e1006386, 2018	26	2018
Toxin production spontaneously becomes regulated by local cell density in evolving bacterial populations HM Doekes, RJ De Boer, R Hermsen PLoS computational biology 15 (8), e1007333, 2019	22	2019
Repeated outbreaks drive the evolution of bacteriophage communication HM Doekes, GA Mulder, R Hermsen Elife 10, e58410, 2021	16	2021
Hierarchical and simultaneous utilization of carbon substrates: mechanistic insights, physiological roles, and ecological consequences H Okano, R Hermsen, T Hwa Current opinion in microbiology 63, 172-178, 2021	11	2021
The adaptation rate of a quantitative trait in an environmental gradient R Hermsen Physical biology 13 (6), 065003, 2016	10	2016
The effect of natural selection on the propagation of protein expression noise to bacterial growth LHJ Krah, R Hermsen PLoS computational biology 17 (7), e1009208, 2021	6	2021
Effects of DNA oxidation on the evolution of genomes M Sheinman, R Hermsen bioRxiv, 150425, 2017	4	2017
Multiscale selection in spatially structured populations HM Doekes, R Hermsen bioRxiv, 2021.12. 21.473617, 2021	3	2021
The interplay between metabolic stochasticity and cAMP-CRP regulation in single E. coli cells M Wehrens, LHJ Krah, BD Towbin, R Hermsen, SJ Tans Cell reports 42 (10), 2023	2	2023

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