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Rutger Hermsen
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The innate growth bistability and fitness landscapes of antibiotic-resistant bacteria
JB Deris, M Kim, Z Zhang, H Okano, R Hermsen, A Groisman, T Hwa
Science 342 (6162), 1237435, 2013
1932013
On the rapidity of antibiotic resistance evolution facilitated by a concentration gradient
R Hermsen, JB Deris, T Hwa
Proceedings of the National Academy of Sciences 109 (27), 10775-10780, 2012
1852012
Transcriptional regulation by competing transcription factor modules
R Hermsen, S Tans, PR Ten Wolde
PLoS computational biology 2 (12), e164, 2006
1462006
A growth‐rate composition formula for the growth of E. coli on co‐utilized carbon substrates
R Hermsen, H Okano, C You, N Werner, T Hwa
Molecular systems biology 11 (4), 801, 2015
982015
Sources and sinks: a stochastic model of evolution in heterogeneous environments
R Hermsen, T Hwa
Physical review letters 105 (24), 248104, 2010
762010
Speed, sensitivity, and bistability in auto-activating signaling circuits
R Hermsen, DW Erickson, T Hwa
PLoS computational biology 7 (11), e1002265, 2011
472011
The naive T-cell receptor repertoire has an extremely broad distribution of clone sizes
PC de Greef, T Oakes, B Gerritsen, M Ismail, JM Heather, R Hermsen, ...
Elife 9, e49900, 2020
452020
Combinatorial gene regulation using auto-regulation
R Hermsen, B Ursem, PR Ten Wolde
PLoS computational biology 6 (6), e1000813, 2010
422010
Regulation underlying hierarchical and simultaneous utilization of carbon substrates by flux sensors in Escherichia coli
H Okano, R Hermsen, K Kochanowski, T Hwa
Nature microbiology 5 (1), 206-215, 2020
332020
Chance and necessity in chromosomal gene distributions
R Hermsen, PR Ten Wolde, S Teichmann
Trends in Genetics 24 (5), 216-219, 2008
292008
Noise propagation in an integrated model of bacterial gene expression and growth
IT Kleijn, LHJ Krah, R Hermsen
PLoS computational biology 14 (10), e1006386, 2018
192018
Toxin production spontaneously becomes regulated by local cell density in evolving bacterial populations
HM Doekes, RJ De Boer, R Hermsen
PLoS computational biology 15 (8), e1007333, 2019
152019
The adaptation rate of a quantitative trait in an environmental gradient
R Hermsen
Physical biology 13 (6), 065003, 2016
82016
Repeated outbreaks drive the evolution of bacteriophage communication
HM Doekes, GA Mulder, R Hermsen
Elife 10, e58410, 2021
6*2021
Identical sequences found in distant genomes reveal frequent horizontal transfer across the bacterial domain
M Sheinman, K Arkhipova, PF Arndt, BE Dutilh, R Hermsen, F Massip
Elife 10, e62719, 2021
4*2021
Effects of DNA oxidation on the evolution of genomes
M Sheinman, R Hermsen
bioRxiv, 150425, 2017
32017
Hierarchical and simultaneous utilization of carbon substrates: mechanistic insights, physiological roles, and ecological consequences
H Okano, R Hermsen, T Hwa
Current Opinion in Microbiology 63, 172-178, 2021
22021
Multiscale selection in spatially structured populations
HM Doekes, R Hermsen
bioRxiv, 2021
22021
The effect of natural selection on the propagation of protein expression noise to bacterial growth
LHJ Krah, R Hermsen
PLoS computational biology 17 (7), e1009208, 2021
12021
Emergent multilevel selection in a simple spatial model of the evolution of altruism
R Hermsen
bioRxiv, 2021
12021
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Articles 1–20