B Kirkpatrick

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	All	Since 2016
Citations	395	157
h-index	10	7
i10-index	11	5

20032004200520062007200820092010201120122013201420152016201720182019202020212 2 3 10 19 8 18 21 38 30 27 27 26 37 32 31 23 32 2

Co-authors

Eran HalperinUniversity of California, Los AngelesVerified email at cs.ucla.edu
Nancy M. AmatoAbel Bliss Professor and Head, Computer Science, University of IllinoisVerified email at illinois.edu
Shawna ThomasDepartment of Computer Science and Engineering, Texas A&M UniversityVerified email at cse.tamu.edu
Brendan MumeyProfessor of Computer Science, Montana State UniversityVerified email at montana.edu
Thomas AngelGlaxoSmithKlineVerified email at gsk.com
Anne CondonProfessor of Computer Science, University of British ColumbiaVerified email at cs.ubc.ca
Liangliang WangSimon Fraser UniversityVerified email at sfu.ca
Jan ManuchComputer Science, University of British ColumbiaVerified email at cs.ubc.ca
Adam M. JohansenUniversity of WarwickVerified email at warwick.ac.uk
Fredrik LindstenAssociate Professor, Linköping UniversityVerified email at liu.se
Shuai Cheng LiDepartment of Computer Science, City University of Hong KongVerified email at cityu.edu.hk
Hilary K FinucaneBroad Institute of MIT and HarvardVerified email at broadinstitute.org
Yakir ReshefVerified email at mit.edu
Carol ZhouLawrence Livermore National LaboratoryVerified email at llnl.gov
Thomas SchönProfessor, Uppsala UniversityVerified email at it.uu.se
Christian A. NaessethPostdoctoral Research Scientist at Columbia UniversityVerified email at columbia.edu
Carlos S. ArmendarizQueen Mary UniversityVerified email at qmul.ac.uk
Kay KirkpatrickAssociate Professor of Physics and Mathematics, University of Illinois at Urbana-ChampaignVerified email at illinois.edu

B Kirkpatrick

Researcher, Intrepid Net Computing

Verified email at intrepidnetcomputing.com - Homepage

Algorithms Computational Biology Machine Learning Computer Security


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Using motion planning to study RNA folding kinetics X Tang, B Kirkpatrick, S Thomas, G Song, NM Amato Journal of Computational Biology 12 (6), 862-881, 2005	75	2005
A new method for mapping discontinuous antibody epitopes to reveal structural features of proteins BM Mumey, BW Bailey, B Kirkpatrick, AJ Jesaitis, T Angel, EA Dratz Journal of Computational Biology 10 (3-4), 555-567, 2003	59	2003
Pedigree reconstruction using identity by descent B Kirkpatrick, SC Li, RM Karp, E Halperin Journal of Computational Biology 18 (11), 1481-1493, 2011	37	2011
Efficient continuous-time Markov chain estimation M Hajiaghayi, B Kirkpatrick, L Wang, A Bouchard-Côté International Conference on Machine Learning, 638-646, 2014	30	2014
STRALCP—structure alignment-based clustering of proteins A Zemla, B Geisbrecht, J Smith, M Lam, B Kirkpatrick, M Wagner, T Slezak, ... Nucleic acids research 35 (22), e150-e150, 2007	29	2007
Divide-and-conquer with sequential Monte Carlo F Lindsten, AM Johansen, CA Naesseth, B Kirkpatrick, TB Schön, ... Journal of Computational and Graphical Statistics 26 (2), 445-458, 2017	26	2017
HaploPool: improving haplotype frequency estimation through DNA pools and phylogenetic modeling B Kirkpatrick, CS Armendariz, RM Karp, E Halperin Bioinformatics 23 (22), 3048-3055, 2007	25	2007
Perfect phylogeny problems with missing values B Kirkpatrick, K Stevens IEEE/ACM transactions on computational biology and bioinformatics 11 (5 …, 2014	18	2014
Comparing pedigree graphs B Kirkpatrick, Y Reshef, H Finucane, H Jiang, B Zhu, RM Karp Journal of Computational Biology 19 (9), 998-1014, 2012	13	2012
Haplotype inference in complex pedigrees B Kirkpatrick, E Halperin, RM Karp Journal of Computational Biology 17 (3), 269-280, 2010	12	2010
Non-identifiable pedigrees and a Bayesian solution B Kirkpatrick Bioinformatics Research and Applications, 139-152, 2012	10	2012
Reachability bounds for chemical reaction networks and strand displacement systems A Condon, B Kirkpatrick, J Maňuch International Workshop on DNA-Based Computers, 43-57, 2012	9	2012
Reachability bounds for chemical reaction networks and strand displacement systems A Condon, B Kirkpatrick, J Maňuch Natural computing 13 (4), 499-516, 2014	7	2014
Haplotypes versus genotypes on pedigrees B Kirkpatrick International Workshop on Algorithms in Bioinformatics, 136-147, 2010	7	2010
A new model for approximating RNA folding trajectories and population kinetics B Kirkpatrick, M Hajiaghayi, A Condon Computational Science & Discovery 6 (1), 014003, 2013	5	2013
Haplotypes versus genotypes on pedigrees BB Kirkpatrick Algorithms for Molecular Biology 6 (1), 1-10, 2011	5	2011
Turing’s Imitation Game: a discussion with the benefit of hind-sight B Kirkpatrick, B Klingner Berkeley Computer Science course. See http://www. cs. berkeley. edu …, 2009	5	2009
Correcting for cryptic relatedness in genome-wide association studies B Kirkpatrick, A Bouchard-Côté arXiv preprint arXiv:1602.07956, 2016	3	2016
Optimal state-space reduction for pedigree hidden Markov models B Kirkpatrick, K Kirkpatrick arXiv preprint arXiv:1202.2468, 2012	3	2012
Efficiently solvable perfect phylogeny problems on binary and k-state data with missing values K Stevens, B Kirkpatrick International Workshop on Algorithms in Bioinformatics, 282-297, 2011	3	2011

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