B Kirkpatrick
B Kirkpatrick
Researcher, Intrepid Net Computing
Verified email at intrepidnetcomputing.com - Homepage
Title
Cited by
Cited by
Year
Using motion planning to study RNA folding kinetics
X Tang, B Kirkpatrick, S Thomas, G Song, NM Amato
Journal of Computational Biology 12 (6), 862-881, 2005
752005
A new method for mapping discontinuous antibody epitopes to reveal structural features of proteins
BM Mumey, BW Bailey, B Kirkpatrick, AJ Jesaitis, T Angel, EA Dratz
Journal of Computational Biology 10 (3-4), 555-567, 2003
592003
Pedigree reconstruction using identity by descent
B Kirkpatrick, SC Li, RM Karp, E Halperin
Journal of Computational Biology 18 (11), 1481-1493, 2011
372011
Efficient continuous-time Markov chain estimation
M Hajiaghayi, B Kirkpatrick, L Wang, A Bouchard-Côté
International Conference on Machine Learning, 638-646, 2014
302014
STRALCP—structure alignment-based clustering of proteins
A Zemla, B Geisbrecht, J Smith, M Lam, B Kirkpatrick, M Wagner, T Slezak, ...
Nucleic acids research 35 (22), e150-e150, 2007
292007
Divide-and-conquer with sequential Monte Carlo
F Lindsten, AM Johansen, CA Naesseth, B Kirkpatrick, TB Schön, ...
Journal of Computational and Graphical Statistics 26 (2), 445-458, 2017
262017
HaploPool: improving haplotype frequency estimation through DNA pools and phylogenetic modeling
B Kirkpatrick, CS Armendariz, RM Karp, E Halperin
Bioinformatics 23 (22), 3048-3055, 2007
252007
Perfect phylogeny problems with missing values
B Kirkpatrick, K Stevens
IEEE/ACM transactions on computational biology and bioinformatics 11 (5 …, 2014
182014
Comparing pedigree graphs
B Kirkpatrick, Y Reshef, H Finucane, H Jiang, B Zhu, RM Karp
Journal of Computational Biology 19 (9), 998-1014, 2012
132012
Haplotype inference in complex pedigrees
B Kirkpatrick, E Halperin, RM Karp
Journal of Computational Biology 17 (3), 269-280, 2010
122010
Non-identifiable pedigrees and a Bayesian solution
B Kirkpatrick
Bioinformatics Research and Applications, 139-152, 2012
102012
Reachability bounds for chemical reaction networks and strand displacement systems
A Condon, B Kirkpatrick, J Maňuch
International Workshop on DNA-Based Computers, 43-57, 2012
92012
Reachability bounds for chemical reaction networks and strand displacement systems
A Condon, B Kirkpatrick, J Maňuch
Natural computing 13 (4), 499-516, 2014
72014
Haplotypes versus genotypes on pedigrees
B Kirkpatrick
International Workshop on Algorithms in Bioinformatics, 136-147, 2010
72010
A new model for approximating RNA folding trajectories and population kinetics
B Kirkpatrick, M Hajiaghayi, A Condon
Computational Science & Discovery 6 (1), 014003, 2013
52013
Haplotypes versus genotypes on pedigrees
BB Kirkpatrick
Algorithms for Molecular Biology 6 (1), 1-10, 2011
52011
Turing’s Imitation Game: a discussion with the benefit of hind-sight
B Kirkpatrick, B Klingner
Berkeley Computer Science course. See http://www. cs. berkeley. edu …, 2009
52009
Correcting for cryptic relatedness in genome-wide association studies
B Kirkpatrick, A Bouchard-Côté
arXiv preprint arXiv:1602.07956, 2016
32016
Optimal state-space reduction for pedigree hidden Markov models
B Kirkpatrick, K Kirkpatrick
arXiv preprint arXiv:1202.2468, 2012
32012
Efficiently solvable perfect phylogeny problems on binary and k-state data with missing values
K Stevens, B Kirkpatrick
International Workshop on Algorithms in Bioinformatics, 282-297, 2011
32011
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