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Andrey Sivachenko
Andrey Sivachenko
Head of Bioinformatics, Cystic Fibrosis Foundation Therapeutics Laboratory
Verified email at cff.org
Title
Cited by
Cited by
Year
The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data
A McKenna, M Hanna, E Banks, A Sivachenko, K Cibulskis, A Kernytsky, ...
Genome research 20 (9), 1297-1303, 2010
248502010
A framework for variation discovery and genotyping using next-generation DNA sequencing data
MA DePristo, E Banks, R Poplin, KV Garimella, JR Maguire, C Hartl, ...
Nature genetics 43 (5), 491-498, 2011
116852011
Comprehensive molecular characterization of human colon and rectal cancer
Cancer Genome Atlas Network
Nature 487 (7407), 330, 2012
74852012
Mutational heterogeneity in cancer and the search for new cancer-associated genes
MS Lawrence, P Stojanov, P Polak, GV Kryukov, K Cibulskis, ...
Nature 499 (7457), 214-218, 2013
58292013
Integrated genomic characterization of endometrial carcinoma
DA Levine, ...
Nature 497 (7447), 67-73, 2013
49102013
Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples
K Cibulskis, MS Lawrence, SL Carter, A Sivachenko, D Jaffe, C Sougnez, ...
Nature biotechnology 31 (3), 213-219, 2013
48082013
Comprehensive genomic characterization of squamous cell lung cancers
Cancer Genome Atlas Research Network
Nature 489 (7417), 519, 2012
36762012
Genome-scale DNA methylation maps of pluripotent and differentiated cells
A Meissner, TS Mikkelsen, H Gu, M Wernig, J Hanna, A Sivachenko, ...
Nature 454 (7205), 766-770, 2008
29822008
A landscape of driver mutations in melanoma
E Hodis, IR Watson, GV Kryukov, ST Arold, M Imielinski, JP Theurillat, ...
Cell 150 (2), 251-263, 2012
29542012
Comprehensive molecular characterization of clear cell renal cell carcinoma
Cancer Genome Atlas Research Network Analysis working group: Baylor College ...
Nature 499 (7456), 43-49, 2013
28322013
The mutational landscape of head and neck squamous cell carcinoma
N Stransky, AM Egloff, AD Tward, AD Kostic, K Cibulskis, A Sivachenko, ...
science 333 (6046), 1157-1160, 2011
28132011
Mapping the hallmarks of lung adenocarcinoma with massively parallel sequencing
M Imielinski, AH Berger, PS Hammerman, B Hernandez, TJ Pugh, ...
Cell 150 (6), 1107-1120, 2012
20002012
Exome sequencing identifies recurrent SPOP, FOXA1 and MED12 mutations in prostate cancer
CE Barbieri, SC Baca, MS Lawrence, F Demichelis, M Blattner, ...
Nature genetics 44 (6), 685-689, 2012
17412012
Initial genome sequencing and analysis of multiple myeloma
MA Chapman, MS Lawrence, JJ Keats, K Cibulskis, C Sougnez, ...
Nature 471 (7339), 467-472, 2011
17022011
Evolution and impact of subclonal mutations in chronic lymphocytic leukemia
DA Landau, SL Carter, P Stojanov, A McKenna, K Stevenson, ...
Cell 152 (4), 714-726, 2013
16282013
The genomic complexity of primary human prostate cancer
MF Berger, MS Lawrence, F Demichelis, Y Drier, K Cibulskis, ...
Nature 470 (7333), 214-220, 2011
14452011
Punctuated evolution of prostate cancer genomes
SC Baca, D Prandi, MS Lawrence, JM Mosquera, A Romanel, Y Drier, ...
Cell 153 (3), 666-677, 2013
14172013
Sequence analysis of mutations and translocations across breast cancer subtypes
S Banerji, K Cibulskis, C Rangel-Escareno, KK Brown, SL Carter, ...
Nature 486 (7403), 405-409, 2012
14102012
SF3B1 and Other Novel Cancer Genes in Chronic Lymphocytic Leukemia
L Wang, MS Lawrence, Y Wan, P Stojanov, C Sougnez, K Stevenson, ...
New England Journal of Medicine 365 (26), 2497-2506, 2011
13872011
The genetic landscape of high-risk neuroblastoma
TJ Pugh, O Morozova, EF Attiyeh, S Asgharzadeh, JS Wei, D Auclair, ...
Nature genetics 45 (3), 279-284, 2013
12022013
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