| Extending the limits of quantitative proteome profiling with data-independent acquisition and application to acetaminophen-treated three-dimensional liver microtissues*[S] R Bruderer, OM Bernhardt, T Gandhi, SM Miladinović, LY Cheng, ... Molecular & Cellular Proteomics 14 (5), 1400-1410, 2015 | 1065 | 2015 |
| An immune atlas of clear cell renal cell carcinoma S Chevrier, JH Levine, VRT Zanotelli, K Silina, D Schulz, M Bacac, ... Cell 169 (4), 736-749. e18, 2017 | 963 | 2017 |
| The single-cell pathology landscape of breast cancer HW Jackson, JR Fischer, VRT Zanotelli, HR Ali, R Mechera, SD Soysal, ... Nature 578 (7796), 615-620, 2020 | 752 | 2020 |
| histoCAT: analysis of cell phenotypes and interactions in multiplex image cytometry data D Schapiro, HW Jackson, S Raghuraman, JR Fischer, VRT Zanotelli, ... Nature methods 14 (9), 873-876, 2017 | 586 | 2017 |
| Compensation of signal spillover in suspension and imaging mass cytometry S Chevrier, HL Crowell, VRT Zanotelli, S Engler, MD Robinson, ... Cell systems 6 (5), 612-620. e5, 2018 | 356 | 2018 |
| Systems-level analysis of mechanisms regulating yeast metabolic flux SR Hackett, VRT Zanotelli, W Xu, J Goya, JO Park, DH Perlman, ... Science 354 (6311), aaf2786, 2016 | 307 | 2016 |
| Simultaneous multiplexed imaging of mRNA and proteins with subcellular resolution in breast cancer tissue samples by mass cytometry D Schulz, VRT Zanotelli, JR Fischer, D Schapiro, S Engler, XK Lun, ... Cell systems 6 (1), 25-36. e5, 2018 | 289 | 2018 |
| Imaging mass cytometry and multiplatform genomics define the phenogenomic landscape of breast cancer HR Ali, HW Jackson, VRT Zanotelli, E Danenberg, JR Fischer, H Bardwell, ... Nature Cancer 1 (2), 163-175, 2020 | 269 | 2020 |
| A map of human type 1 diabetes progression by imaging mass cytometry N Damond, S Engler, VRT Zanotelli, D Schapiro, CH Wasserfall, ... Cell metabolism 29 (3), 755-768. e5, 2019 | 253 | 2019 |
| In-depth characterization of monocyte-derived macrophages using a mass cytometry-based phagocytosis assay D Schulz, Y Severin, VRT Zanotelli, B Bodenmiller Scientific reports 9 (1), 1925, 2019 | 185 | 2019 |
| Breast tumor microenvironment structures are associated with genomic features and clinical outcome E Danenberg, H Bardwell, VRT Zanotelli, E Provenzano, SF Chin, ... Nature genetics 54 (5), 660-669, 2022 | 177 | 2022 |
| An end-to-end workflow for multiplexed image processing and analysis J Windhager, VRT Zanotelli, D Schulz, L Meyer, M Daniel, B Bodenmiller, ... Nature Protocols 18 (11), 3565-3613, 2023 | 127 | 2023 |
| CATALYST: cytometry dATa anALYSis tools HL Crowell, VRT Zanotelli, S Chevrier, MD Robinson, B Bodenmiller Bioconductor version: Release (3.11) 10, B9, 2020 | 67 | 2020 |
| Long‐term exposure to bis(2‐ethylhexyl)phthalate (DEHP) inhibits growth of guppy fish (Poecilia reticulata) VRT Zanotelli, SCF Neuhauss, MU Ehrengruber Journal of Applied Toxicology: An International Journal 30 (1), 29-33, 2010 | 65 | 2010 |
| Influence of node abundance on signaling network state and dynamics analyzed by mass cytometry XK Lun, VRT Zanotelli, JD Wade, D Schapiro, M Tognetti, N Dobberstein, ... Nature biotechnology 35 (2), 164-172, 2017 | 52 | 2017 |
| ImcSegmentationPipeline: A pixelclassification based multiplexed image segmentation pipeline VRT Zanotelli, B Bodenmiller Zenodo https://doi. org/10.5281/zenodo 3841960, 2017 | 51 | 2017 |
| Analysis of the human kinome and phosphatome by mass cytometry reveals overexpression-induced effects on cancer-related signaling XK Lun, D Szklarczyk, A Gábor, N Dobberstein, VRT Zanotelli, ... Molecular cell 74 (5), 1086-1102. e5, 2019 | 44 | 2019 |
| A quantitative analysis of the interplay of environment, neighborhood, and cell state in 3D spheroids VRT Zanotelli, M Leutenegger, XK Lun, F Georgi, N de Souza, ... Molecular Systems Biology 16 (12), e9798, 2020 | 22 | 2020 |
| A flexible image segmentation pipeline for heterogeneous multiplexed tissue images based on pixel classification VRT Zanotelli, B Bodenmiller | 5 | 2019 |
| Evidence for interaction of 5, 10-methylenetetrahydrofolate reductase (MTHFR) with methylenetetrahydrofolate dehydrogenase (MTHFD1) and general control nonderepressible 1 (GCN1) LR Büchler, LKM Blomgren, C Bürer, VRT Zanotelli, DS Froese Biochimie, 2024 | | 2024 |
Bernd BodenmillerDual Professor University of Zurich and ETH Zurich. Director, Department of Quantitative BiomedicineVerified email at uzh.ch
