Cliff Meyer
Cliff Meyer
Dana-Farber Cancer Institute and Harvard T.H. Chan School of Public Health
Verified email at
Cited by
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Model-based analysis of ChIP-Seq (MACS)
Y Zhang, T Liu, CA Meyer, J Eeckhoute, DS Johnson, BE Bernstein, ...
Genome biology 9, 1-9, 2008
Genome-wide analysis of estrogen receptor binding sites
JS Carroll, CA Meyer, J Song, W Li, TR Geistlinger, J Eeckhoute, ...
Nature genetics 38 (11), 1289-1297, 2006
Chromosome-wide mapping of estrogen receptor binding reveals long-range regulation requiring the forkhead protein FoxA1
JS Carroll, XS Liu, AS Brodsky, W Li, CA Meyer, AJ Szary, J Eeckhoute, ...
Cell 122 (1), 33-43, 2005
FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription
M Lupien, J Eeckhoute, CA Meyer, Q Wang, Y Zhang, W Li, JS Carroll, ...
Cell 132 (6), 958-970, 2008
Androgen receptor regulates a distinct transcription program in androgen-independent prostate cancer
Q Wang, W Li, Y Zhang, X Yuan, K Xu, J Yu, Z Chen, R Beroukhim, ...
Cell 138 (2), 245-256, 2009
Handbook of test problems in local and global optimization
CA Floudas, PM Pardalos, C Adjiman, WR Esposito, ZH Gümüs, ...
Springer Science & Business Media, 2013
Cistrome: an integrative platform for transcriptional regulation studies
T Liu, JA Ortiz, L Taing, CA Meyer, B Lee, Y Zhang, H Shin, SS Wong, ...
Genome biology 12, 1-10, 2011
Sequence determinants of improved CRISPR sgRNA design
H Xu, T Xiao, CH Chen, W Li, CA Meyer, Q Wu, D Wu, L Cong, F Zhang, ...
Genome research 25 (8), 1147-1157, 2015
Response and resistance to BET bromodomain inhibitors in triple-negative breast cancer
S Shu, CY Lin, HH He, RM Witwicki, DP Tabassum, JM Roberts, ...
Nature 529 (7586), 413-417, 2016
Cistrome Data Browser: expanded datasets and new tools for gene regulatory analysis
R Zheng, C Wan, S Mei, Q Qin, Q Wu, H Sun, CH Chen, M Brown, ...
Nucleic acids research 47 (D1), D729-D735, 2019
Nucleosome dynamics define transcriptional enhancers
HH He, CA Meyer, H Shin, ST Bailey, G Wei, Q Wang, Y Zhang, K Xu, ...
Nature genetics 42 (4), 343-347, 2010
Model-based analysis of tiling-arrays for ChIP-chip
WE Johnson, W Li, CA Meyer, R Gottardo, JS Carroll, M Brown, XS Liu
Proceedings of the National Academy of Sciences 103 (33), 12457-12462, 2006
Cistrome Data Browser: a data portal for ChIP-Seq and chromatin accessibility data in human and mouse
S Mei, Q Qin, Q Wu, H Sun, R Zheng, C Zang, M Zhu, J Wu, X Shi, L Taing, ...
Nucleic acids research, gkw983, 2016
Target analysis by integration of transcriptome and ChIP-seq data with BETA
S Wang, H Sun, J Ma, C Zang, C Wang, J Wang, Q Tang, CA Meyer, ...
Nature protocols 8 (12), 2502-2515, 2013
GFOLD: a generalized fold change for ranking differentially expressed genes from RNA-seq data
J Feng, CA Meyer, Q Wang, JS Liu, X Shirley Liu, Y Zhang
Bioinformatics 28 (21), 2782-2788, 2012
Identifying and mitigating bias in next-generation sequencing methods for chromatin biology
CA Meyer, XS Liu
Nature Reviews Genetics 15 (11), 709-721, 2014
Transcriptional role of cyclin D1 in development revealed by a genetic–proteomic screen
F Bienvenu, S Jirawatnotai, JE Elias, CA Meyer, K Mizeracka, A Marson, ...
Nature 463 (7279), 374-378, 2010
Global optimization in the 21st century: Advances and challenges
CA Floudas, IG Akrotirianakis, S Caratzoulas, CA Meyer, J Kallrath
Computers & Chemical Engineering 29 (6), 1185-1202, 2005
Refined DNase-seq protocol and data analysis reveals intrinsic bias in transcription factor footprint identification
HH He, CA Meyer, SS Hu, MW Chen, C Zang, Y Liu, PK Rao, T Fei, H Xu, ...
Nature methods 11 (1), 73-78, 2014
Differentiation-specific histone modifications reveal dynamic chromatin interactions and partners for the intestinal transcription factor CDX2
MP Verzi, H Shin, HH He, R Sulahian, CA Meyer, RK Montgomery, ...
Developmental cell 19 (5), 713-726, 2010
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