| Comprehensive evaluation of transcriptome-based cell-type quantification methods for immuno-oncology G Sturm, F Finotello, F Petitprez, JD Zhang, J Baumbach, WH Fridman, ... Bioinformatics 35 (14), i436-i445, 2019 | 733 | 2019 |
| High-resolution single-cell atlas reveals diversity and plasticity of tissue-resident neutrophils in non-small cell lung cancer S Salcher, G Sturm, L Horvath, G Untergasser, C Kuempers, G Fotakis, ... Cancer Cell 40 (12), 1503-1520. e8, 2022 | 183 | 2022 |
| Immunedeconv: An R Package for Unified Access to Computational Methods for Estimating Immune Cell Fractions from Bulk RNA-Sequencing Data G Sturm, F Finotello, M List Bioinformatics for Cancer Immunotherapy, 223-232, 2020 | 181 | 2020 |
| Scirpy: a Scanpy extension for analyzing single-cell T-cell receptor-sequencing data G Sturm, T Szabo, G Fotakis, M Haider, D Rieder, Z Trajanoski, F Finotello Bioinformatics 36 (18), 4817-4818, 2020 | 155 | 2020 |
| The scverse project provides a computational ecosystem for single-cell omics data analysis I Virshup, D Bredikhin, L Heumos, G Palla, G Sturm, A Gayoso, I Kats, ... Nature Biotechnology, 1-3, 2023 | 122 | 2023 |
| CD39 identifies the CD4+ tumor-specific T-cell population in human cancer KE Kortekaas, SJ Santegoets, G Sturm, I Ehsan, SL van Egmond, ... Cancer immunology research, 2020 | 111* | 2020 |
| Detect tissue heterogeneity in gene expression data with BioQC JD Zhang, K Hatje, G Sturm, C Broger, M Ebeling, M Burtin, F Terzi, ... BMC genomics 18, 1-9, 2017 | 59 | 2017 |
| The AIMe registry for artificial intelligence in biomedical research J Matschinske, N Alcaraz, A Benis, M Golebiewski, DG Grimm, L Heumos, ... Nature methods 18 (10), 1128-1131, 2021 | 53 | 2021 |
| Inducers of the endothelial cell barrier identified through chemogenomic screening in genome-edited hPSC-endothelial cells F Roudnicky, JD Zhang, BK Kim, NJ Pandya, Y Lan, L Sach-Peltason, ... Proceedings of the National Academy of Sciences 117 (33), 19854-19865, 2020 | 48 | 2020 |
| NKG2A is a late immune checkpoint on CD8 T cells and marks repeated stimulation and cell division L Borst, M Sluijter, G Sturm, P Charoentong, SJ Santegoets, M van Gulijk, ... International journal of cancer 150 (4), 688-704, 2022 | 40 | 2022 |
| Immune cell dynamics deconvoluted by single-cell RNA sequencing in normothermic machine perfusion of the liver T Hautz, S Salcher, M Fodor, G Sturm, S Ebner, A Mair, M Trebo, ... Nature Communications 14 (1), 2285, 2023 | 38 | 2023 |
| Tumor-specific T cells support chemokine-driven spatial organization of intratumoral immune microaggregates needed for long survival Z Abdulrahman, SJ Santegoets, G Sturm, P Charoentong, ME Ijsselsteijn, ... Journal for immunotherapy of cancer 10 (2), 2022 | 30 | 2022 |
| Single cell dynamics of tumor specificity vs bystander activity in CD8+ T cells define the diverse immune landscapes in colorectal cancer DM Borràs, S Verbandt, M Ausserhofer, G Sturm, J Lim, GA Verge, ... Cell Discovery 9 (1), 114, 2023 | 25 | 2023 |
| CD161 expression and regulation defines rapidly responding effector CD4+ T cells associated with improved survival in HPV16-associated tumors CL Duurland, SJ Santegoets, Z Abdulrahman, NM Loof, G Sturm, ... Journal for immunotherapy of cancer 10 (1), 2022 | 24 | 2022 |
| SimBu: bias-aware simulation of bulk RNA-seq data with variable cell-type composition A Dietrich, G Sturm, L Merotto, F Marini, F Finotello, M List Bioinformatics 38 (Supplement_2), ii141-ii147, 2022 | 18 | 2022 |
| A gut bacterial signature in blood and liver tissue characterizes cirrhosis and hepatocellular carcinoma M Effenberger, S Waschina, C Bronowski, G Sturm, O Tassiello, ... Hepatology Communications 7 (7), 2023 | 14 | 2023 |
| Tissue heterogeneity is prevalent in gene expression studies G Sturm, M List, JD Zhang NAR Genomics and Bioinformatics 3 (3), lqab077, 2021 | 13 | 2021 |
| Dynamic, Transient, and Robust Increase in the Innervation of the Inflamed Mucosa in Inflammatory Bowel Diseases M Gonzalez Acera, M Bubeck, F Mascia, L Diemand, G Sturm, AA Kühl, ... Cells 10 (9), 2253, 2021 | 9 | 2021 |
| In Silico Cell-Type Deconvolution Methods in Cancer Immunotherapy G Sturm, F Finotello, M List Bioinformatics for Cancer Immunotherapy, 213-222, 2020 | 9 | 2020 |
| IL-20 controls resolution of experimental colitis by regulating epithelial IFN/STAT2 signalling MT Chiriac, Z Hracsko, C Günther, M Gonzalez-Acera, R Atreya, I Stolzer, ... Gut 73 (2), 282-297, 2024 | 8 | 2024 |
Francesca FinotelloUniversity of Innsbruck, AustriaVerified email at uibk.ac.at
