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Gregor Sturm
Gregor Sturm
Verified email at boehringer-ingelheim.com - Homepage
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Cited by
Year
Comprehensive evaluation of transcriptome-based cell-type quantification methods for immuno-oncology
G Sturm, F Finotello, F Petitprez, JD Zhang, J Baumbach, WH Fridman, ...
Bioinformatics 35 (14), i436-i445, 2019
6022019
Immunedeconv: An R Package for Unified Access to Computational Methods for Estimating Immune Cell Fractions from Bulk RNA-Sequencing Data
G Sturm, F Finotello, M List
Bioinformatics for Cancer Immunotherapy, 223-232, 2020
1292020
Scirpy: a Scanpy extension for analyzing single-cell T-cell receptor-sequencing data
G Sturm, T Szabo, G Fotakis, M Haider, D Rieder, Z Trajanoski, F Finotello
Bioinformatics 36 (18), 4817-4818, 2020
1022020
CD39 identifies the CD4+ tumor-specific T-cell population in human cancer
KE Kortekaas, SJ Santegoets, G Sturm, I Ehsan, SL van Egmond, ...
Cancer immunology research, 2020
85*2020
High-resolution single-cell atlas reveals diversity and plasticity of tissue-resident neutrophils in non-small cell lung cancer
S Salcher, G Sturm, L Horvath, G Untergasser, C Kuempers, G Fotakis, ...
Cancer Cell 40 (12), 1503-1520. e8, 2022
842022
Detect tissue heterogeneity in gene expression data with BioQC
JD Zhang, K Hatje, G Sturm, C Broger, M Ebeling, M Burtin, F Terzi, ...
BMC genomics 18, 1-9, 2017
542017
The AIMe registry for artificial intelligence in biomedical research
J Matschinske, N Alcaraz, A Benis, M Golebiewski, DG Grimm, L Heumos, ...
Nature methods 18 (10), 1128-1131, 2021
452021
Inducers of the endothelial cell barrier identified through chemogenomic screening in genome-edited hPSC-endothelial cells
F Roudnicky, JD Zhang, BK Kim, NJ Pandya, Y Lan, L Sach-Peltason, ...
Proceedings of the National Academy of Sciences 117 (33), 19854-19865, 2020
422020
The scverse project provides a computational ecosystem for single-cell omics data analysis
I Virshup, D Bredikhin, L Heumos, G Palla, G Sturm, A Gayoso, I Kats, ...
Nature Biotechnology, 1-3, 2023
412023
NKG2A is a late immune checkpoint on CD8 T cells and marks repeated stimulation and cell division
L Borst, M Sluijter, G Sturm, P Charoentong, SJ Santegoets, M van Gulijk, ...
International journal of cancer 150 (4), 688-704, 2022
242022
Tumor-specific T cells support chemokine-driven spatial organization of intratumoral immune microaggregates needed for long survival
Z Abdulrahman, SJ Santegoets, G Sturm, P Charoentong, ME Ijsselsteijn, ...
Journal for immunotherapy of cancer 10 (2), 2022
192022
CD161 expression and regulation defines rapidly responding effector CD4+ T cells associated with improved survival in HPV16-associated tumors
CL Duurland, SJ Santegoets, Z Abdulrahman, NM Loof, G Sturm, ...
Journal for immunotherapy of cancer 10 (1), 2022
162022
Immune cell dynamics deconvoluted by single-cell RNA sequencing in normothermic machine perfusion of the liver
T Hautz, S Salcher, M Fodor, G Sturm, S Ebner, A Mair, M Trebo, ...
Nature Communications 14 (1), 2285, 2023
142023
SimBu: bias-aware simulation of bulk RNA-seq data with variable cell-type composition
A Dietrich, G Sturm, L Merotto, F Marini, F Finotello, M List
Bioinformatics 38 (Supplement_2), ii141-ii147, 2022
112022
Tissue heterogeneity is prevalent in gene expression studies
G Sturm, M List, JD Zhang
NAR Genomics and Bioinformatics 3 (3), lqab077, 2021
112021
A gut bacterial signature in blood and liver tissue characterizes cirrhosis and hepatocellular carcinoma
M Effenberger, S Waschina, C Bronowski, G Sturm, O Tassiello, ...
Hepatology Communications 7 (7), 2023
62023
Single cell dynamics of tumor specificity vs bystander activity in CD8+ T cells define the diverse immune landscapes in colorectal cancer
DM Borràs, S Verbandt, M Ausserhofer, G Sturm, J Lim, GA Verge, ...
Cell Discovery 9 (1), 114, 2023
52023
Dynamic, Transient, and Robust Increase in the Innervation of the Inflamed Mucosa in Inflammatory Bowel Diseases
M Gonzalez Acera, M Bubeck, F Mascia, L Diemand, G Sturm, AA Kühl, ...
Cells 10 (9), 2253, 2021
52021
In Silico Cell-Type Deconvolution Methods in Cancer Immunotherapy
G Sturm, F Finotello, M List
Bioinformatics for Cancer Immunotherapy, 213-222, 2020
42020
Functional and spatial proteomics profiling reveals intra-and intercellular signaling crosstalk in colorectal cancer
C Plattner, G Lamberti, P Blattmann, A Kirchmair, D Rieder, Z Loncova, ...
Iscience 26 (12), 2023
32023
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