Kalliopi Trachana
Title
Cited by
Cited by
Year
eggNOG v3. 0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges
S Powell, D Szklarczyk, K Trachana, A Roth, M Kuhn, J Muller, R Arnold, ...
Nucleic acids research 40 (D1), D284-D289, 2012
5042012
eggNOG v4. 0: nested orthology inference across 3686 organisms
S Powell, K Forslund, D Szklarczyk, K Trachana, A Roth, J Huerta-Cepas, ...
Nucleic acids research 42 (D1), D231-D239, 2014
4122014
Ancient animal microRNAs and the evolution of tissue identity
F Christodoulou, F Raible, R Tomer, O Simakov, K Trachana, S Klaus, ...
Nature 463 (7284), 1084-1088, 2010
2982010
Cell fate decision as high-dimensional critical state transition
M Mojtahedi, A Skupin, J Zhou, IG Castaņo, RYY Leong-Quong, H Chang, ...
PLoS biology 14 (12), e2000640, 2016
1822016
Orthology prediction methods: a quality assessment using curated protein families
K Trachana, TA Larsson, S Powell, WH Chen, T Doerks, J Muller, P Bork
Bioessays 33 (10), 769-780, 2011
1292011
Younger genes are less likely to be essential than older genes, and duplicates are less likely to be essential than singletons of the same age
WH Chen, K Trachana, MJ Lercher, P Bork
Molecular biology and evolution 29 (7), 1703-1706, 2012
682012
Cell population structure prior to bifurcation predicts efficiency of directed differentiation in human induced pluripotent cells
R Bargaje, K Trachana, MN Shelton, CS McGinnis, JX Zhou, C Chadick, ...
Proceedings of the National Academy of Sciences 114 (9), 2271-2276, 2017
552017
Acquisition of a bacterial RumA‐type tRNA (uracil‐54, C5)‐methyltransferase by Archaea through an ancient horizontal gene transfer
J Urbonavičius, S Auxilien, H Walbott, K Trachana, ...
Molecular microbiology 67 (2), 323-335, 2008
542008
Taking systems medicine to heart
K Trachana, R Bargaje, G Glusman, ND Price, S Huang, LE Hood
Circulation research 122 (9), 1276-1289, 2018
252018
Gene socialization: gene order, GC content and gene silencing in Salmonella
N Papanikolaou, K Trachana, T Theodosiou, VJ Promponas, I Iliopoulos
BMC genomics 10 (1), 1-10, 2009
212009
A phylogeny-based benchmarking test for orthology inference reveals the limitations of function-based validation
K Trachana, K Forslund, T Larsson, S Powell, T Doerks, C Von Mering, ...
PloS one 9 (11), e111122, 2014
132014
Phylostratigraphic analysis of tumor and developmental transcriptomes reveals relationship between oncogenesis, phylogenesis and ontogenesis
JX Zhou, L Cisneros, T Knijnenburg, K Trachana, P Davies, S Huang
Convergent Science Physical Oncology 4 (2), 025002, 2018
102018
Evolution and regulation of cellular periodic processes: a role for paralogues
K Trachana, LJ Jensen, P Bork
EMBO reports 11 (3), 233-238, 2010
62010
Evolution of spatiotemporal organization of biological systems: Origins and phenotypic impact of duplicated genes
K Trachana
2011
Quality assessment of orthology prediction methods using curated protein families
K Trachana, T Larsson, S Powell, WH Chen, T Doerks, J Muller, P Bork
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Articles 1–15