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Katerina Kraft
Katerina Kraft
Postdoc, Stanford
Verified email at stanford.edu
Title
Cited by
Cited by
Year
Disruptions of topological chromatin domains cause pathogenic rewiring of gene-enhancer interactions
DG Lupiáñez, K Kraft, V Heinrich, P Krawitz, F Brancati, E Klopocki, ...
Cell 161 (5), 1012-1025, 2015
21242015
Formation of new chromatin domains determines pathogenicity of genomic duplications
M Franke, DM Ibrahim, G Andrey, W Schwarzer, V Heinrich, R Schöpflin, ...
Nature 538 (7624), 265-269, 2016
6862016
Deletions, inversions, duplications: engineering of structural variants using CRISPR/Cas in mice
K Kraft, S Geuer, AJ Will, WL Chan, C Paliou, M Borschiwer, I Harabula, ...
Cell reports 10 (5), 833-839, 2015
2462015
Polymer physics predicts the effects of structural variants on chromatin architecture
S Bianco, DG Lupiáñez, AM Chiariello, C Annunziatella, K Kraft, ...
Nature genetics 50 (5), 662-667, 2018
1792018
Dynamic 3D chromatin architecture contributes to enhancer specificity and limb morphogenesis
BK Kragesteen, M Spielmann, C Paliou, V Heinrich, R Schöpflin, ...
Nature genetics 50 (10), 1463-1473, 2018
1732018
Identifying cis elements for spatiotemporal control of mammalian DNA replication
J Sima, A Chakraborty, V Dileep, M Michalski, KN Klein, NP Holcomb, ...
Cell 176 (4), 816-830. e18, 2019
1672019
ecDNA hubs drive cooperative intermolecular oncogene expression
KL Hung, KE Yost, L Xie, Q Shi, K Helmsauer, J Luebeck, R Schöpflin, ...
Nature 600 (7890), 731-736, 2021
1662021
Serial genomic inversions induce tissue-specific architectural stripes, gene misexpression and congenital malformations
K Kraft, A Magg, V Heinrich, C Riemenschneider, R Schöpflin, ...
Nature cell biology 21 (3), 305-310, 2019
1212019
Regulation of cell polarity in the cartilage growth plate and perichondrium of metacarpal elements by HOXD13 and WNT5A
P Kuss, K Kraft, J Stumm, D Ibrahim, P Vallecillo-Garcia, S Mundlos, ...
Developmental biology 385 (1), 83-93, 2014
852014
Polycomb-mediated genome architecture enables long-range spreading of H3K27 methylation
K Kraft, KE Yost, SE Murphy, A Magg, Y Long, MR Corces, JM Granja, ...
Proceedings of the National Academy of Sciences 119 (22), e2201883119, 2022
502022
Xist ribonucleoproteins promote female sex-biased autoimmunity
DR Dou, Y Zhao, JA Belk, Y Zhao, KM Casey, DC Chen, R Li, B Yu, ...
Cell 187 (3), 733-749. e16, 2024
452024
Single-cell multiome of the human retina and deep learning nominate causal variants in complex eye diseases
SK Wang, S Nair, R Li, K Kraft, A Pampari, A Patel, JB Kang, C Luong, ...
Cell genomics 2 (8), 2022
292022
3D genome mapping identifies subgroup-specific chromosome conformations and tumor-dependency genes in ependymoma
K Okonechnikov, A Camgöz, O Chapman, S Wani, DE Park, JM Hübner, ...
Nature Communications 14 (1), 2300, 2023
42023
Identification of cis elements for spatio-temporal control of DNA replication
J Sima, A Chakraborty, V Dileep, M Michalski, JC Rivera-Mulia, ...
bioRxiv, 285650, 2018
32018
Bidirectional epigenetic editing reveals hierarchies in gene regulation
NM Pacalin, Z Steinhart, Q Shi, JA Belk, D Dorovskyi, K Kraft, KR Parker, ...
Nature Biotechnology, 1-14, 2024
12024
XIST ribonucleoproteins promote female sex-biased autoimmunity
DR Dou, Y Zhao, JA Belk, Y Zhao, KM Casey, DC Chen, R Li, B Yu, ...
bioRxiv, 2022.11. 05.515306, 2022
12022
OMIC-01. THE LANDSCAPE OF EXTRACHROMOSOMAL CIRCULAR DNA IN MEDULLOBLASTOMA SUBGROUPS
O Chapman, J Luebeck, S Wang, A Garancher, J Larson, J Lange, ...
Neuro-oncology 23 (Supplement_1), i37-i37, 2021
12021
EPEN-18. Oncogenic 3D genome conformations identify novel therapeutic targets in ependymoma
K Okonechnikov, A Camgöz, DE Park, O Chapman, JM Hübner, A Jenseit, ...
Neuro-Oncology 24 (Supplement_1), i42-i42, 2022
2022
Resolving complex structural variants in recurrent brain tumors
K Okonechnikov, J Huebner, O Chapman, A Chakraborty, M Pagadal, ...
EUROPEAN JOURNAL OF HUMAN GENETICS 28 (SUPPL 1), 126-127, 2020
2020
GENE-15. TARGETING OF EPENDYMOMA AS INFORMED BY ONCOGENIC 3D GENOME ORGANIZATION
K Okonechnikov, JM Hübner, O Chapman, A Chakraborty, R Bump, ...
Neuro-oncology 21 (Supplement_6), vi100-vi100, 2019
2019
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