| Early Lotus japonicus root transcriptomic responses to symbiotic and pathogenic fungal exudates M Giovannetti, A Mari, M Novero, P Bonfante Frontiers in Plant Science 6, 480, 2015 | 51 | 2015 |
| SARS-CoV-2 outbreak in a tri-national urban area is dominated by a B. 1 lineage variant linked to a mass gathering event M Stange, A Mari, T Roloff, HMB Seth-Smith, M Schweitzer, M Brunner, ... PLoS pathogens 17 (3), e1009374, 2021 | 47 | 2021 |
| Brief validation of the novel GeneXpert Xpress SARS-CoV-2 PCR assay D Goldenberger, K Leuzinger, KK Sogaard, R Gosert, T Roloff, K Naegele, ... Journal of virological methods 284, 113925, 2020 | 46 | 2020 |
| SARS-CoV-2 N501Y introductions and transmissions in Switzerland from beginning of October 2020 to February 2021—implementation of Swiss-wide diagnostic screening and whole … AR Goncalves Cabecinhas, T Roloff, M Stange, C Bertelli, M Huber, ... Microorganisms 9 (4), 677, 2021 | 43 | 2021 |
| The Leaf Microbiome of Arabidopsis Displays Reproducible Dynamics and Patterns throughout the Growing Season J Almario, M Mahmoudi, S Kroll, M Agler, A Placzek, A Mari, E Kemen mbio 13 (3), e02825-21, 2022 | 32 | 2022 |
| Global genomic analysis of SARS-CoV-2 RNA dependent RNA polymerase evolution and antiviral drug resistance A Mari, T Roloff, M Stange, KK Søgaard, E Asllanaj, G Tauriello, ... Microorganisms 9 (5), 1094, 2021 | 32 | 2021 |
| Swiss public health measures associated with reduced SARS-CoV-2 transmission using genome data SA Nadeau, TG Vaughan, C Beckmann, I Topolsky, C Chen, E Hodcroft, ... Science translational medicine 15 (680), eabn7979, 2022 | 31 | 2022 |
| Determinants of SARS-CoV-2 transmission to guide vaccination strategy in an urban area SC Brüningk, J Klatt, M Stange, A Mari, M Brunner, TC Roloff, ... Virus evolution 8 (1), veac002, 2022 | 20 | 2022 |
| Obtaining deeper insights into microbiome diversity using a simple method to block host and nontargets in amplicon sequencing T Mayer, A Mari, J Almario, M Murillo‐Roos, H Syed M. Abdullah, ... Molecular ecology resources 21 (6), 1952-1965, 2021 | 19 | 2021 |
| External quality assessment of SARS-CoV-2 sequencing: an ESGMD-SSM pilot trial across 15 European laboratories F Wegner, T Roloff, M Huber, S Cordey, A Ramette, Y Gerth, C Bertelli, ... Journal of clinical microbiology 60 (1), e01698-21, 2022 | 16 | 2022 |
| New insights in host-associated microbial diversity with broad and accurate taxonomic resolution MT Agler, A Mari, N Dombrowski, S Haquard, EM Kemen bioRxiv, 050005, 2016 | 14 | 2016 |
| Quantifying SARS-CoV-2 spread in Switzerland based on genomic sequencing data S Nadeau, C Beckmann, I Topolsky, T Vaughan, E Hodcroft, T Schär, ... medRxiv, 2020.10. 14.20212621, 2020 | 13 | 2020 |
| The leaf microbiome of J Almario, M Mahmoudi, S Kroll, M Agler, A Placzek, A Mari, E Kemen Arabidopsis, 2022 | 11 | 2022 |
| A novel phyllosphere resident Protomyces species that interacts with the Arabidopsis immune system K Wang, T Sipilä, S Rajaraman, O Safronov, P Laine, A Auzane, A Mari, ... Biorxiv, 594028, 2019 | 6 | 2019 |
| The leaf microbiome of arabidopsis displays reproducible dynamics and patterns throughout the growing season. MBIO 13 (3): e02825-21 J Almario, M Mahmoudi, S Kroll, M Agler, A Placzek, A Mari, E Kemen, ... | 5 | 2022 |
| Global surveillance of potential antiviral drug resistance in SARS-CoV-2: proof of concept focussing on the RNA-dependent RNA polymerase A Mari, T Roloff, M Stange, KK Søgaard, E Asllanaj, G Tauriello, ... medRxiv, 2020.12. 28.20248663, 2021 | 3 | 2021 |
| Obtaining deeper insights into microbiome diversity using a simple method to block host and non-targets in amplicon sequencing T Mayer, A Mari, J Almario, M Murillo-Roos, M Abdullah, N Dombrowski, ... bioRxiv, 2020.10. 05.322305, 2020 | 2 | 2020 |
| SARS-CoV-2 in schools: genome analysis shows that concurrent cases in the second and third wave were often unconnected M Stange, E Wuerfel, JK Peter, H Seth-Smith, T Roloff, S Gsponer, A Mari, ... medRxiv, 2022.01. 26.22269824, 2022 | 1 | 2022 |
| Life on leaves: uncovering temporal dynamics in Arabidopsis’ leaf microbiota J Almario, M Mahmudi, S Kroll, M Agler, A Placzek, A Mari, E Kemen bioRxiv, 2021.07. 06.450897, 2021 | 1 | 2021 |
| ESBL Displace: A Protocol for an Observational Study to Identify Displacing Escherichia coli Strain Candidates from ESBL-Colonized Travel Returners Using … M Schweitzer, A Mari, T Roloff, E Künzli, S Heller, D Albertos Torres, ... Microbiology Research 14 (1), 177-189, 2023 | | 2023 |
