Erik van Nimwegen

Cited by

	All	Since 2019
Citations	20450	7124
h-index	59	36
i10-index	97	78

1500

750

375

1125

200020012002200320042005200620072008200920102011201220132014201520162017201820192020202120222023202456 103 98 114 141 223 447 587 548 600 702 726 914 1044 1265 1441 1428 1376 1289 1294 1268 1395 1230 1042 887

Public access

View all

58 articles

0 articles

available

not available

Based on funding mandates

Co-authors

Mihaela ZavolanProfessor of Computational Biology, Biozentrum, University of BaselVerified email at unibas.ch
Piotr J BalwierzPostdoctoral Researcher, Imperial College LondonVerified email at imperial.ac.uk
James CrutchfieldDistinguished Professor of Physics, University of California at DavisVerified email at ucdavis.edu
Dirk SchübelerDirector, Friedrich Miescher Institute for Biomedical Research, Basel, SwitzerlandVerified email at fmi.ch
Lukas BurgerResearch Associate, Friedrich Miescher Institute for Biomedical ResearchVerified email at fmi.ch
Robert IvanekHead of Bioinformatics at the Department of Biomedicine, University of BaselVerified email at unibas.ch
Olin SilanderSenior Research Fellow, Liggins Institute, University of AucklandVerified email at auckland.ac.nz
Andreas J. GruberUniversity of KonstanzVerified email at uni-konstanz.de
Eric SiggiaRockefeller UniversityVerified email at cornell.edu
Nacho MolinaIGBMC - CNRS - INSERM - University of StrasbourgVerified email at igbmc.fr
Ionas ErbCentre for Genomic Regulation (CRG), BarcelonaVerified email at crg.eu
Martijn HuynenMBS, Radboud University Medical CentreVerified email at radboudumc.nl
Thomas JulouBiozentrum BaselVerified email at normalesup.org
Carsten O. DaubAssociate Professor, Karolinska InstitutetVerified email at ki.se
Nikolaus RajewskyProfessor, Systems Biology, Max Delbruck Center for Molecular Medicine, BerlinVerified email at mdc-berlin.de
Carninci PieroRIKEN IMS (Yokohama, JP) and Human Technopole (Milan, IT)Verified email at postman.riken.jp
Jeremie BredaEPFLVerified email at epfl.ch
Christian BeiselHead Genomics Facility Basel, ETH ZurichVerified email at bsse.ethz.ch
Jean HausserKarolinska Institutet & SciLifeLabVerified email at ki.se
Christoph HandschinUniversity of Basel, BiozentrumVerified email at unibas.ch

Erik van Nimwegen

Professor of computational systems biology, Biozentrum, University of Basel

Verified email at unibas.ch - Homepage

computational biology genomics systems biology transcription regulation genome evolution


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
The transcriptional landscape of the mammalian genome P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, ... science 309 (5740), 1559-1563, 2005	4130	2005
A promoter-level mammalian expression atlas Nature 507 (7493), 462-470, 2014	1774	2014
DNA-binding factors shape the mouse methylome at distal regulatory regions MB Stadler, R Murr, L Burger, R Ivanek, F Lienert, A Schöler, E Nimwegen, ... Nature 480 (7378), 490-495, 2011	1513	2011
An atlas of combinatorial transcriptional regulation in mouse and man T Ravasi, H Suzuki, CV Cannistraci, S Katayama, VB Bajic, K Tan, ... Cell 140 (5), 744-752, 2010	862	2010
Decay rates of human mRNAs: correlation with functional characteristics and sequence attributes E Yang, E van Nimwegen, M Zavolan, N Rajewsky, M Schroeder, ... Genome research 13 (8), 1863-1872, 2003	772	2003
Neutral evolution of mutational robustness E Van Nimwegen, JP Crutchfield, M Huynen Proceedings of the National Academy of Sciences 96 (17), 9716-9720, 1999	709	1999
Sox4 is a master regulator of epithelial-mesenchymal transition by controlling Ezh2 expression and epigenetic reprogramming N Tiwari, VK Tiwari, L Waldmeier, PJ Balwierz, P Arnold, M Pachkov, ... Cancer cell 23 (6), 768-783, 2013	508	2013
Automated reconstruction of whole-genome phylogenies from short-sequence reads F Bertels, OK Silander, M Pachkov, PB Rainey, E Van Nimwegen Molecular biology and evolution 31 (5), 1077-1088, 2014	479	2014
Inference of miRNA targets using evolutionary conservation and pathway analysis D Gaidatzis, E van Nimwegen, J Hausser, M Zavolan BMC bioinformatics 8, 1-22, 2007	461	2007
The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line Nature genetics 41 (5), 553-562, 2009	422	2009
Scaling laws in the functional content of genomes E van Nimwegen Trends in Genetics 19 (9), 479-484, 2003	399	2003
PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogeny R Siddharthan, ED Siggia, E Van Nimwegen PLoS computational biology 1 (7), e67, 2005	366	2005
Adipose tissue microRNAs as regulators of CCL2 production in human obesity E Arner, N Mejhert, A Kulyté, PJ Balwierz, M Pachkov, M Cormont, ... Diabetes 61 (8), 1986-1993, 2012	344	2012
ISMARA: automated modeling of genomic signals as a democracy of regulatory motifs PJ Balwierz, M Pachkov, P Arnold, AJ Gruber, M Zavolan, ... Genome research 24 (5), 869-884, 2014	325	2014
Identification of clustered microRNAs using an ab initio prediction method A Sewer, N Paul, P Landgraf, A Aravin, S Pfeffer, MJ Brownstein, T Tuschl, ... BMC bioinformatics 6, 1-15, 2005	313	2005
Tyrosine phosphatase SHP2 promotes breast cancer progression and maintains tumor-initiating cells via activation of key transcription factors and a positive feedback signaling loop N Aceto, N Sausgruber, H Brinkhaus, D Gaidatzis, G Martiny-Baron, ... Nature medicine 18 (4), 529-537, 2012	310	2012
A probabilistic method to detect regulatory modules S Sinha, E Van Nimwegen, ED Siggia Bioinformatics-Oxford 19 (1), 292-301, 2003	279	2003
The frequency distribution of gene family sizes in complete genomes. MA Huynen, E Van Nimwegen Molecular biology and evolution 15 (5), 583-589, 1998	270	1998
Disentangling direct from indirect co-evolution of residues in protein alignments L Burger, E Van Nimwegen PLoS computational biology 6 (1), e1000633, 2010	237	2010
Accurate prediction of protein–protein interactions from sequence alignments using a Bayesian method L Burger, E Van Nimwegen Molecular systems biology 4 (1), 165, 2008	235	2008

The system can't perform the operation now. Try again later.

Articles 1–20

Citations per year

Duplicate citations

Merged citations

Add co-authorsCo-authors

Follow

Cited by

Co-authors