Kessy Abarenkov
Kessy Abarenkov
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Towards a unified paradigm for sequence‐based identification of fungi
U Kõljalg, RH Nilsson, K Abarenkov, L Tedersoo, AFS Taylor, M Bahram, ...
Molecular ecology 22 (21), 5271-5277, 2013
17352013
Global diversity and geography of soil fungi
L Tedersoo, M Bahram, S Põlme, U Kõljalg, NS Yorou, R Wijesundera, ...
science 346 (6213), 2014
13802014
The UNITE database for molecular identification of fungi–recent updates and future perspectives
K Abarenkov, RH Nilsson, KH Larsson, IJ Alexander, U Eberhardt, ...
The New phytologist 186 (2), 281-285, 2010
10212010
UNITE: a database providing web‐based methods for the molecular identification of ectomycorrhizal fungi
U Kõljalg, KH Larsson, K Abarenkov, RH Nilsson, IJ Alexander, ...
New Phytologist 166 (3), 1063-1068, 2005
7522005
Fungal community analysis by high‐throughput sequencing of amplified markers–a user's guide
BD Lindahl, RH Nilsson, L Tedersoo, K Abarenkov, T Carlsen, R Kjøller, ...
New phytologist 199 (1), 288-299, 2013
6612013
Taxonomic reliability of DNA sequences in public sequence databases: a fungal perspective
RH Nilsson, M Ryberg, E Kristiansson, K Abarenkov, KH Larsson, ...
PloS one 1 (1), e59, 2006
5862006
Improved software detection and extraction of ITS1 and ITS 2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data
J Bengtsson‐Palme, M Ryberg, M Hartmann, S Branco, Z Wang, A Godhe, ...
Methods in ecology and evolution 4 (10), 914-919, 2013
5722013
454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases
L Tedersoo, RH Nilsson, K Abarenkov, T Jairus, A Sadam, I Saar, ...
New phytologist 188 (1), 291-301, 2010
5362010
Strong host preference of ectomycorrhizal fungi in a Tasmanian wet sclerophyll forest as revealed by DNA barcoding and taxon‐specific primers
L Tedersoo, T Jairus, BM Horton, K Abarenkov, T Suvi, I Saar, U Kõljalg
New Phytologist 180 (2), 479-490, 2008
3522008
ITS 1 versus ITS 2 as DNA metabarcodes for fungi
R Blaalid, S Kumar, RH Nilsson, K Abarenkov, PM Kirk, H Kauserud
Molecular ecology resources 13 (2), 218-224, 2013
2732013
The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications
RH Nilsson, KH Larsson, AFS Taylor, J Bengtsson-Palme, TS Jeppesen, ...
Nucleic acids research 47 (D1), D259-D264, 2019
2682019
The ITS region as a target for characterization of fungal communities using emerging sequencing technologies
RH Nilsson, M Ryberg, K Abarenkov, E Sjökvist, E Kristiansson
FEMS Microbiology Letters 296 (1), 97-101, 2009
2582009
PlutoF—a web based workbench for ecological and taxonomic research, with an online implementation for fungal ITS sequences
K Abarenkov, L Tedersoo, RH Nilsson, K Vellak, I Saar, V Veldre, ...
Evolutionary Bioinformatics 6, EBO. S6271, 2010
2262010
Shotgun metagenomes and multiple primer pair-barcode combinations of amplicons reveal biases in metabarcoding analyses of fungi
L Tedersoo, S Anslan, M Bahram, S Põlme, T Riit, I Liiv, U Kõljalg, ...
MycoKeys 10, 1, 2015
2252015
Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi
CL Schoch, B Robbertse, V Robert, D Vu, G Cardinali, L Irinyi, W Meyer, ...
Database 2014, 2014
2102014
An open source software package for automated extraction of ITS1 and ITS2 from fungal ITS sequences for use in high-throughput community assays and molecular ecology
RH Nilsson, V Veldre, M Hartmann, M Unterseher, A Amend, J Bergsten, ...
fungal ecology 3 (4), 284-287, 2010
1842010
Resistance and resilience of the forest soil microbiome to logging-associated compaction
M Hartmann, PA Niklaus, S Zimmermann, S Schmutz, J Kremer, ...
The ISME journal 8 (1), 226-244, 2014
1612014
A comprehensive, automatically updated fungal ITS sequence dataset for reference-based chimera control in environmental sequencing efforts
RH Nilsson, L Tedersoo, M Ryberg, E Kristiansson, M Hartmann, ...
Microbes and environments, ME14121, 2015
1552015
Tree diversity and species identity effects on soil fungi, protists and animals are context dependent
L Tedersoo, M Bahram, T Cajthaml, S Põlme, I Hiiesalu, S Anslan, ...
The ISME journal 10 (2), 346-362, 2016
1522016
High-level classification of the Fungi and a tool for evolutionary ecological analyses
L Tedersoo, S Sánchez-Ramírez, U Koljalg, M Bahram, M Döring, ...
Fungal diversity 90 (1), 135-159, 2018
1372018
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