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Jason William Labonte
Jason William Labonte
Visiting Assistant Research Professor, Johns Hopkins University
Verified email at jhu.edu - Homepage
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Cited by
Cited by
Year
The Rosetta all-atom energy function for macromolecular modeling and design
RF Alford, A Leaver-Fay, JR Jeliazkov, MJ O’Meara, FP DiMaio, H Park, ...
Journal of chemical theory and computation 13 (6), 3031-3048, 2017
12722017
Macromolecular modeling and design in Rosetta: recent methods and frameworks
JK Leman, BD Weitzner, SM Lewis, J Adolf-Bryfogle, N Alam, RF Alford, ...
Nature Methods, 1-14, 2020
5812020
A comprehensive, high-resolution map of a gene’s fitness landscape
E Firnberg, JW Labonte, JJ Gray, M Ostermeier
Molecular biology and evolution 31 (6), 1581-1592, 2014
3322014
Structural basis for biosynthetic programming of fungal aromatic polyketide cyclization
JM Crawford, TP Korman, JW Labonte, AL Vagstad, EA Hill, ...
Nature 461 (7267), 1139-1143, 2009
2072009
Structure and function of an iterative polyketide synthase thioesterase domain catalyzing Claisen cyclization in aflatoxin biosynthesis
TP Korman, JM Crawford, JW Labonte, AG Newman, J Wong, ...
Proceedings of the National Academy of Sciences 107 (14), 6246-6251, 2010
1232010
Structural diversity in the type IV pili of multidrug-resistant Acinetobacter
KH Piepenbrink, E Lillehoj, CM Harding, JW Labonte, X Zuo, CA Rapp, ...
Journal of Biological Chemistry 291 (44), 22924–22935, 2016
782016
Adding diverse noncanonical backbones to rosetta: enabling peptidomimetic design
K Drew, PD Renfrew, TW Craven, GL Butterfoss, FC Chou, S Lyskov, ...
PLoS One 8 (7), e67051, 2013
742013
Characterization of a fungal thioesterase having Claisen cyclase and deacetylase activities in melanin biosynthesis
AL Vagstad, EA Hill, JW Labonte, CA Townsend
Chemistry & biology 19 (12), 1525-1534, 2012
542012
Active site comparisons and catalytic mechanisms of the hot dog superfamily
JW Labonte, CA Townsend
Chem. Rev 113 (3), 2182-2204, 2013
492013
Residue‐centric modeling and design of saccharide and glycoconjugate structures
JW Labonte, J Adolf‐Bryfogle, WR Schief, JJ Gray
Journal of Computational Chemistry 38 (5), 276–287, 2017
462017
Better Together: Elements of Successful Scientific Software Development in a Distributed Collaborative Community.
J Koehler Leman, BD Weitzner, PD Renfrew, SM Lewis, R Moretti, ...
PLoS Computational Biology 16, e1007507, 2020
342020
NMR detection and study of hydrolysis of HNO-derived sulfinamides
G Keceli, CD Moore, JW Labonte, JP Toscano
Biochemistry 52 (42), 7387-7396, 2013
292013
Extending RosettaDock with water, sugar, and pH for prediction of complex structures and affinities for CAPRI rounds 20–27
KP Kilambi, MS Pacella, J Xu, JW Labonte, JR Porter, P Muthu, K Drew, ...
Proteins: Structure, Function, and Bioinformatics 81 (12), 2201-2209, 2013
212013
Development of a Broadly Accessible, Computationally Guided Biochemistry Course-Based Undergraduate Research Experience
A Vater, J Mayoral, J Nunez-Castilla, JW Labonte, LA Briggs, JJ Gray, ...
Journal of Chemical Education, 2020
192020
Computational design of mixed chirality peptide macrocycles with internal symmetry
VK Mulligan, CS Kang, MR Sawaya, S Rettie, X Li, I Antselovich, ...
Protein Science 29 (12), 2433-2445, 2020
192020
Novel Sampling Strategies and a Coarse‐Grained Score Function for Docking Homomers, Flexible Heteromers, and Oligosaccharides Using Rosetta in CAPRI Rounds 37–45.
SS Roy Burman, ML Nance, JR Jeliazkov, JW Labonte, JH Lubin, ...
Proteins, 1-13, 2019
182019
Glycoengineering of Esterase Activity through Metabolic Flux‐Based Modulation of Sialic Acid
MP Mathew, E Tan, JW Labonte, S Shah, CT Saeui, L Liu, R Bhattacharya, ...
ChemBioChem 18 (13), 1204-1215, 2017
122017
Molecular determinants for protein stabilization by insertional fusion to a thermophilic host protein
B Pierre, JW Labonte, T Xiong, E Aoraha, A Williams, V Shah, E Chau, ...
ChemBioChem 16 (16), 2392-2402, 2015
122015
Autoproteolytic activation of ThnT results in structural reorganization necessary for substrate binding and catalysis
AR Buller, JW Labonte, MF Freeman, NT Wright, JF Schildbach, ...
Journal of molecular biology 422 (4), 508-518, 2012
102012
Engineering the synthetic potential of β-lactam synthetase and the importance of catalytic loop dynamics
JW Labonte, F Kudo, MF Freeman, ML Raber, CA Townsend
MedChemComm 3 (8), 960-966, 2012
52012
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