|ROSETTA3: an object-oriented software suite for the simulation and design of macromolecules|
A Leaver-Fay, M Tyka, SM Lewis, OF Lange, J Thompson, R Jacak, ...
Methods in enzymology 487, 545-574, 2011
|Scientific benchmarks for guiding macromolecular energy function improvement|
A Leaver-Fay, MJ O'meara, M Tyka, R Jacak, Y Song, EH Kellogg, ...
Methods in enzymology 523, 109-143, 2013
|Tailored immunogens direct affinity maturation toward HIV neutralizing antibodies|
B Briney, D Sok, JG Jardine, DW Kulp, P Skog, S Menis, R Jacak, ...
Cell 166 (6), 1459-1470. e11, 2016
|Community-wide assessment of protein-interface modeling suggests improvements to design methodology|
SJ Fleishman, TA Whitehead, EM Strauch, JE Corn, S Qin, HX Zhou, ...
Journal of molecular biology 414 (2), 289-302, 2011
|Viruses at solid–water interfaces: a systematic assessment of interactions driving adsorption|
A Armanious, M Aeppli, R Jacak, D Refardt, T Sigstam, T Kohn, M Sander
Environmental science & technology 50 (2), 732-743, 2016
|A generic program for multistate protein design|
A Leaver-Fay, R Jacak, PB Stranges, B Kuhlman
PloS one 6 (7), e20937, 2011
|Alternative computational protocols for supercharging protein surfaces for reversible unfolding and retention of stability|
BS Der, C Kluwe, AE Miklos, R Jacak, S Lyskov, JJ Gray, G Georgiou, ...
PLoS One 8 (5), e64363, 2013
|Computational protein design with explicit consideration of surface hydrophobic patches|
R Jacak, A Leaver‐Fay, B Kuhlman
Proteins: Structure, Function, and Bioinformatics 80 (3), 825-838, 2012
|The length dependence of the polyQ-mediated protein aggregation|
S Barton, R Jacak, SD Khare, F Ding, NV Dokholyan
Journal of Biological Chemistry 282 (35), 25487-25492, 2007
|Lipid interactions and angle of approach to the HIV-1 viral membrane of broadly neutralizing antibody 10E8: Insights for vaccine and therapeutic design|
A Irimia, AM Serra, A Sarkar, R Jacak, O Kalyuzhniy, D Sok, ...
PLoS pathogens 13 (2), e1006212, 2017
|A structural bioinformatics approach for identifying proteins predisposed to bind linear epitopes on pre-selected target proteins|
EJ Choi, R Jacak, B Kuhlman
Protein Engineering, Design & Selection 26 (4), 283-289, 2013
|Immunogens of HIV-1 broadly neutralizing antibodies, methods of generation and uses thereof|
WR Schief, BE Correia, DW Kulp, R Jacak
US Patent 9,707,290, 2017
|Increased insert length changes association mechanism of chimeric CI2-polyQ protein|
S Barton, F Ding, R Jacak, SD Khare, NV Dokholyan
BIOPHYSICAL JOURNAL, 561A-561A, 2007