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Anna Paola Carrieri
Anna Paola Carrieri
Manager & Research Scientist at IBM Research
Verified email at uk.ibm.com
Title
Cited by
Cited by
Year
Human skin, oral, and gut microbiomes predict chronological age
S Huang, N Haiminen, AP Carrieri, R Hu, L Jiang, L Parida, B Russell, ...
Msystems 5 (1), 10.1128/msystems. 00630-19, 2020
892020
Challenges in benchmarking metagenomic profilers
Z Sun, S Huang, M Zhang, Q Zhu, N Haiminen, AP Carrieri, ...
Nature methods 18 (6), 618-626, 2021
822021
Explainable AI reveals changes in skin microbiome composition linked to phenotypic differences
AP Carrieri, N Haiminen, S Maudsley-Barton, LJ Gardiner, B Murphy, ...
Scientific reports 11 (1), 4565, 2021
722021
Standardized multi-omics of Earth’s microbiomes reveals microbial and metabolite diversity
JP Shaffer, LF Nothias, LR Thompson, JG Sanders, RA Salido, ...
Nature microbiology 7 (12), 2128-2150, 2022
452022
SARS-CoV-2 detection status associates with bacterial community composition in patients and the hospital environment
C Marotz, P Belda-Ferre, F Ali, P Das, S Huang, K Cantrell, L Jiang, ...
Microbiome 9 (1), 132, 2021
382021
EMPress enables tree-guided, interactive, and exploratory analyses of multi-omic data sets
K Cantrell, MW Fedarko, G Rahman, D McDonald, Y Yang, T Zaw, ...
MSystems 6 (2), 10.1128/msystems. 01216-20, 2021
352021
Streaming histogram sketching for rapid microbiome analytics
WPM Rowe, AP Carrieri, C Alcon-Giner, S Caim, A Shaw, K Sim, JS Kroll, ...
Microbiome 7, 1-13, 2019
202019
Fixed-parameter algorithms for scaffold filling
L Bulteau, AP Carrieri, R Dondi
Theoretical Computer Science 568, 72-83, 2015
202015
Efficient computation of Faith's phylogenetic diversity with applications in characterizing microbiomes
G Armstrong, K Cantrell, S Huang, D McDonald, N Haiminen, AP Carrieri, ...
Genome research 31 (11), 2131-2137, 2021
172021
Using human in vitro transcriptome analysis to build trustworthy machine learning models for prediction of animal drug toxicity
LJ Gardiner, AP Carrieri, J Wilshaw, S Checkley, EO Pyzer-Knapp, ...
Scientific reports 10 (1), 9522, 2020
172020
Combining explainable machine learning, demographic and multi-omic data to inform precision medicine strategies for inflammatory bowel disease
LJ Gardiner, AP Carrieri, K Bingham, G Macluskie, D Bunton, M McNeil, ...
PloS one 17 (2), e0263248, 2022
142022
Explaining evolution via constrained persistent perfect phylogeny
P Bonizzoni, AP Carrieri, G Della Vedova, G Trucco
BMC genomics 15, 1-10, 2014
142014
Accelerating molecular discovery through data and physical sciences: Applications to peptide-membrane interactions
F Cipcigan, AP Carrieri, EO Pyzer-Knapp, R Krishna, YW Hsiao, M Winn, ...
The Journal of Chemical Physics 148 (24), 2018
132018
A colored graph approach to perfect phylogeny with persistent characters
P Bonizzoni, AP Carrieri, G Della Vedova, R Rizzi, G Trucco
Theoretical Computer Science 658, 60-73, 2017
132017
Interpreting machine learning models to investigate circadian regulation and facilitate exploration of clock function
LJ Gardiner, R Rusholme-Pilcher, J Colmer, H Rees, JM Crescente, ...
Proceedings of the National Academy of Sciences 118 (32), e2103070118, 2021
122021
Microbial context predicts SARS-CoV-2 prevalence in patients and the hospital built environment
C Marotz, P Belda-Ferre, F Ali, P Das, S Huang, K Cantrell, L Jiang, ...
medRxiv, 2020
122020
Multi-omics profiling of Earth’s biomes reveals patterns of diversity and co-occurrence in microbial and metabolite composition across environments
JP Shaffer, LF Nothias, LR Thompson, JG Sanders, RA Salido, ...
bioRxiv, 2021.06. 04.446988, 2021
112021
Topological signatures for population admixture
L Parida, F Utro, D Yorukoglu, AP Carrieri, D Kuhn, S Basu
Research in Computational Molecular Biology: 19th Annual International …, 2015
112015
A fast machine learning workflow for rapid phenotype prediction from whole shotgun metagenomes
AP Carrieri, WPM Rowe, M Winn, EO Pyzer-Knapp
Proceedings of the AAAI Conference on Artificial Intelligence 33 (01), 9434-9439, 2019
102019
When and how the perfect phylogeny model explains evolution
P Bonizzoni, AP Carrieri, GD Vedova, R Dondi, TM Przytycka
Discrete and Topological Models in Molecular Biology, 67-83, 2014
102014
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Articles 1–20