| Spatial phylogenetics of the native California flora AH Thornhill, BG Baldwin, WA Freyman, S Nosratinia, MM Kling, ... BMC Biology 15 (1), 96, 2017 | 81 | 2017 |
| The Universal Floristic Quality Assessment (FQA) Calculator: an online tool for ecological assessment and monitoring WA Freyman, LA Masters, S Packard Methods in Ecology and Evolution 7 (3), 380–383, 2016 | 78 | 2016 |
| Genetic consequences of the transatlantic slave trade in the Americas SJ Micheletti, K Bryc, SGA Esselmann, WA Freyman, ME Moreno, ... The American Journal of Human Genetics, 2020 | 71 | 2020 |
| Spatial phylogenetics of the vascular flora of Chile RA Scherson, AH Thornhill, R Urbina-Casanova, WA Freyman, ... Molecular Phylogenetics and Evolution 112, 88-95, 2017 | 60 | 2017 |
| Retracing the Hawaiian silversword radiation despite phylogenetic, biogeographic, and paleogeographic uncertainty MJ Landis, WA Freyman, BG Baldwin Evolution 72 (11), 2343-2359, 2018 | 56 | 2018 |
| Species richness and endemism in the native flora of California BG Baldwin, AH Thornhill, WA Freyman, DD Ackerly, MM Kling, ... American Journal of Botany 104 (3), 487-501, 2017 | 56 | 2017 |
| Cladogenetic and anagenetic models of chromosome number evolution: a Bayesian model averaging approach WA Freyman, S Höhna Systematic Biology 67 (2), 195-215, 2018 | 54 | 2018 |
| Interaction among ploidy, breeding system and lineage diversification R Zenil‐Ferguson, JG Burleigh, WA Freyman, B Igić, I Mayrose, ... New Phytologist 224 (3), 1252-1265, 2019 | 31 | 2019 |
| Stochastic character mapping of state-dependent diversification reveals the tempo of evolutionary decline in self-compatible lineages WA Freyman, S Höhna Systematic Biology 68 (3), 505-519, 2019 | 28 | 2019 |
| SUMAC: constructing phylogenetic supermatrices and assessing partially decisive taxon coverage WA Freyman Evolutionary Bioinformatics 11, 263-266, 2015 | 24 | 2015 |
| A Bayesian approach for estimating branch-specific speciation and extinction rates S Höhna, WA Freyman, Z Nolen, JP Huelsenbeck, MR May, BR Moore BioRxiv, 555805, 2019 | 21 | 2019 |
| Fast and robust identity-by-descent inference with the templated positional Burrows-Wheeler transform WA Freyman, KF McManus, SS Shringarpure, EM Jewett, K Bryc, A Auton Molecular Biology and Evolution, 2020 | 13 | 2020 |
| Pleistocene radiation of the serpentine-adapted genus Hesperolinon and other divergence times in Linaceae (Malpighiales) AC Schneider, WA Freyman, CM Guilliams, YP Springer, BG Baldwin American Journal of Botany 103 (2), 221-232, 2016 | 13 | 2016 |
| Homologizer: phylogenetic phasing of gene copies into polyploid subgenomes WA Freyman, MG Johnson, CJ Rothfels bioRxiv, 2020 | 10 | 2020 |
| Inferring the evolutionary reduction of corm lobation in Isoëtes using Bayesian model‐averaged ancestral state reconstruction FD Freund, WA Freyman, CJ Rothfels American Journal of Botany 105 (2), 275-286, 2018 | 10 | 2018 |
| Species selection regime and phylogenetic tree shape GA Verboom, FC Boucher, DD Ackerly, LM Wootton, WA Freyman Systematic Biology 69 (4), 774-794, 2020 | 9 | 2020 |
| RevGadgets: An R package for visualizing Bayesian phylogenetic analyses from RevBayes CM Tribble, WA Freyman, MJ Landis, JY Lim, J Barido‐Sottani, ... Methods in Ecology and Evolution 13 (2), 314-323, 2022 | 8 | 2022 |
| A Bayesian approach for estimating branch-specific speciation and extinction rates. bioRxiv, 555805 S Hoehna, WA Freyman, Z Nolen, JP Huelsenbeck, MR May, BR Moore | 6 | 2019 |
| The Universal Floristic Quality Assessment (FQA) Calculator [Computer program] WA Freyman, LA Masters | 6 | 2013 |
| Methods and systems for determining and displaying pedigrees EM Jewett, AC Seaman, KF McManus, WA Freyman, CT Blakkan, A Auton, ... US Patent App. 16/948,311, 2021 | 5 | 2021 |
