Virginie Uhlmann
Virginie Uhlmann
Research Group Leader, EMBL-EBI
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Snakes on a plane: A perfect snap for bioimage analysis
R Delgado-Gonzalo, V Uhlmann, D Schmitter, M Unser
IEEE Signal Processing Magazine 32 (1), 41-48, 2014
REMBI: Recommended Metadata for Biological Images—enabling reuse of microscopy data in biology
U Sarkans, W Chiu, L Collinson, MC Darrow, J Ellenberg, D Grunwald, ...
Nature methods 18 (12), 1418-1422, 2021
CP-CHARM: segmentation-free image classification made accessible
V Uhlmann, S Singh, AE Carpenter
BMC bioinformatics 17, 1-12, 2016
Splinedist: Automated cell segmentation with spline curves
S Mandal, V Uhlmann
2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI), 1082-1086, 2021
Deep learning for bioimage analysis in developmental biology
A Hallou, HG Yevick, B Dumitrascu, V Uhlmann
Development 148 (18), dev199616, 2021
FlyLimbTracker: An active contour based approach for leg segment tracking in unmarked, freely behaving Drosophila
V Uhlmann, P Ramdya, R Delgado-Gonzalo, R Benton, M Unser
PLoS One 12 (4), e0173433, 2017
Exponential Hermite Splines for the Analysis of Biomedical Images
V Uhlmann, R Delgado-Gonzalo, C Conti, L Romani, M Unser
Proceedings of the Thirty-Ninth IEEE International Conference on Acoustics …, 2014
Multiresolution subdivision snakes
A Badoual, D Schmitter, V Uhlmann, M Unser
IEEE Transactions on Image Processing 26 (3), 1188-1201, 2016
Automated classification of immunostaining patterns in breast tissue from the human protein atlas
IN Swamidoss, A Kårsnäs, V Uhlmann, P Ponnusamy, C Kampf, ...
Journal of pathology informatics 4 (2), 14, 2013
Hermite snakes with control of tangents
V Uhlmann, J Fageot, M Unser
IEEE Transactions on Image Processing 25 (6), 2803-2816, 2016
Efficient shape priors for spline-based snakes
R Delgado-Gonzalo, D Schmitter, V Uhlmann, M Unser
IEEE Transactions on Image Processing 24 (11), 3915-3926, 2015
Design of steerable wavelets to detect multifold junctions
Z Püspöki, V Uhlmann, C Vonesch, M Unser
IEEE Transactions on Image Processing 25 (2), 643-657, 2015
Gaussian and sparse processes are limits of generalized Poisson processes
J Fageot, V Uhlmann, M Unser
Applied and Computational Harmonic Analysis 48 (3), 1045-1065, 2020
Support and approximation properties of Hermite splines
J Fageot, S Aziznejad, M Unser, V Uhlmann
Journal of computational and applied mathematics 368, 112503, 2020
Supervised learning to quantify amyloidosis in whole brains of an Alzheimer’s disease mouse model acquired with optical projection tomography
D Nguyen, V Uhlmann, AL Planchette, PJ Marchand, D Van De Ville, ...
Biomedical optics express 10 (6), 3041-3060, 2019
Principled design and implementation of steerable detectors
J Fageot, V Uhlmann, Z Püspöki, B Beck, M Unser, A Depeursinge
IEEE transactions on image processing 30, 4465-4478, 2021
Multimodal imaging and high-throughput image-processing for drug screening on living organisms on-chip
D Migliozzi, M Cornaglia, L Mouchiroud, V Uhlmann, MA Unser, J Auwerx, ...
Journal of biomedical optics 24 (2), 021205-021205, 2019
Embryo‐uterine interaction coordinates mouse embryogenesis during implantation
V Bondarenko, M Nikolaev, D Kromm, R Belousov, A Wolny, ...
The EMBO Journal 42 (17), e113280, 2023
MorphoFeatures for unsupervised exploration of cell types, tissues, and organs in volume electron microscopy
V Zinchenko, J Hugger, V Uhlmann, D Arendt, A Kreshuk
Elife 12, e80918, 2023
VOW: Variance-optimal wavelets for the steerable pyramid
P Pad, V Uhlmann, M Unser
2014 IEEE International Conference on Image Processing (ICIP), 2973-2977, 2014
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