Jan Baumbach
Title
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Cited by
Year
clusterMaker: a multi-algorithm clustering plugin for Cytoscape
JH Morris, L Apeltsin, AM Newman, J Baumbach, T Wittkop, G Su, ...
BMC bioinformatics 12 (1), 436, 2011
3462011
AltAnalyze and DomainGraph: analyzing and visualizing exon expression data
D Emig, N Salomonis, J Baumbach, T Lengauer, BR Conklin, M Albrecht
Nucleic acids research 38 (suppl_2), W755-W762, 2010
2462010
Graph-based analysis and visualization of experimental results with ONDEX
J Köhler, J Baumbach, J Taubert, M Specht, A Skusa, A Rüegg, ...
Bioinformatics 22 (11), 1383-1390, 2006
2322006
Comparing the performance of biomedical clustering methods
C Wiwie, J Baumbach, R Röttger
Nature methods 12 (11), 1033, 2015
1542015
Partitioning biological data with transitivity clustering
T Wittkop, D Emig, S Lange, S Rahmann, M Albrecht, JH Morris, S Böcker, ...
Nature methods 7 (6), 419-420, 2010
1172010
Current breathomics—a review on data pre-processing techniques and machine learning in metabolomics breath analysis
A Smolinska, AC Hauschild, RRR Fijten, JW Dallinga, J Baumbach, ...
Journal of breath research 8 (2), 027105, 2014
1072014
The GlxR regulon of the amino acid producer Corynebacterium glutamicum: in silico and in vitro detection of DNA binding sites of a global transcription regulator
TA Kohl, J Baumbach, B Jungwirth, A Pühler, A Tauch
Journal of Biotechnology 135 (4), 340-350, 2008
992008
Evidence for reductive genome evolution and lateral acquisition of virulence functions in two Corynebacterium pseudotuberculosis strains
JC Ruiz, V D'Afonseca, A Silva, A Ali, AC Pinto, AR Santos, AAMC Rocha, ...
PloS one 6 (4), e18551, 2011
952011
Large scale clustering of protein sequences with FORCE-A layout based heuristic for weighted cluster editing
T Wittkop, J Baumbach, FP Lobo, S Rahmann
BMC bioinformatics 8 (1), 1-12, 2007
872007
Analysis of the airway microbiota of healthy individuals and patients with chronic obstructive pulmonary disease by T-RFLP and clone sequencing
T Zakharkina, E Heinzel, RA Koczulla, T Greulich, K Rentz, JK Pauling, ...
PloS one 8 (7), e68302, 2013
832013
CoryneRegNet 4.0–A reference database for corynebacterial gene regulatory networks
J Baumbach
BMC bioinformatics 8 (1), 429, 2007
772007
CoryneRegNet 6.0—Updated database content, new analysis methods and novel features focusing on community demands
J Pauling, R Röttger, A Tauch, V Azevedo, J Baumbach
Nucleic acids research 40 (D1), D610-D614, 2012
742012
CoryneRegNet: an ontology-based data warehouse of corynebacterial transcription factors and regulatory networks
J Baumbach, K Brinkrolf, LF Czaja, S Rahmann, A Tauch
BMC genomics 7 (1), 1-12, 2006
742006
Exact and heuristic algorithms for weighted cluster editing
S Rahmann, T Wittkop, J Baumbach, M Martin, A Truss, S Böcker
Computational Systems Bioinformatics: (Volume 6), 391-401, 2007
722007
PIPS: pathogenicity island prediction software
SC Soares, VAC Abreu, RTJ Ramos, L Cerdeira, A Silva, J Baumbach, ...
PloS one 7 (2), e30848, 2012
682012
Comprehensive cluster analysis with Transitivity Clustering
T Wittkop, D Emig, A Truss, M Albrecht, S Böcker, J Baumbach
Nature protocols 6 (3), 285-295, 2011
632011
Comprehensive evaluation of transcriptome-based cell-type quantification methods for immuno-oncology
G Sturm, F Finotello, F Petitprez, JD Zhang, J Baumbach, WH Fridman, ...
Bioinformatics 35 (14), i436-i445, 2019
622019
GIPSy: genomic island prediction software
SC Soares, H Geyik, RTJ Ramos, PHCG de Sá, EGV Barbosa, ...
Journal of biotechnology 232, 2-11, 2016
572016
GEDEVO: an evolutionary graph edit distance algorithm for biological network alignment
R Ibragimov, M Malek, J Guo, J Baumbach
German Conference on Bioinformatics 2013, 2013
572013
From Corynebacterium glutamicum to Mycobacterium tuberculosis—towards transfers of gene regulatory networks and integrated data analyses with MycoRegNet
J Krawczyk, TA Kohl, A Goesmann, J Kalinowski, J Baumbach
Nucleic Acids Research 37 (14), e97-e97, 2009
512009
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Articles 1–20