Jan Baumbach
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Year
clusterMaker: a multi-algorithm clustering plugin for Cytoscape
JH Morris, L Apeltsin, AM Newman, J Baumbach, T Wittkop, G Su, ...
BMC bioinformatics 12 (1), 436, 2011
3032011
AltAnalyze and DomainGraph: analyzing and visualizing exon expression data
D Emig, N Salomonis, J Baumbach, T Lengauer, BR Conklin, M Albrecht
Nucleic acids research 38 (suppl_2), W755-W762, 2010
2352010
Graph-based analysis and visualization of experimental results with ONDEX
J Köhler, J Baumbach, J Taubert, M Specht, A Skusa, A Rüegg, ...
Bioinformatics 22 (11), 1383-1390, 2006
2252006
Comparing the performance of biomedical clustering methods
C Wiwie, J Baumbach, R Röttger
Nature methods 12 (11), 1033, 2015
1422015
Partitioning biological data with transitivity clustering
T Wittkop, D Emig, S Lange, S Rahmann, M Albrecht, JH Morris, S Böcker, ...
Nature methods 7 (6), 419-420, 2010
1082010
The GlxR regulon of the amino acid producer Corynebacterium glutamicum: in silico and in vitro detection of DNA binding sites of a global transcription regulator
TA Kohl, J Baumbach, B Jungwirth, A Pühler, A Tauch
Journal of Biotechnology 135 (4), 340-350, 2008
972008
Current breathomics—a review on data pre-processing techniques and machine learning in metabolomics breath analysis
A Smolinska, AC Hauschild, RRR Fijten, JW Dallinga, J Baumbach, ...
Journal of breath research 8 (2), 027105, 2014
962014
Evidence for reductive genome evolution and lateral acquisition of virulence functions in two Corynebacterium pseudotuberculosis strains
JC Ruiz, V D'Afonseca, A Silva, A Ali, AC Pinto, AR Santos, AAMC Rocha, ...
PloS one 6 (4), 2011
912011
Large scale clustering of protein sequences with FORCE-A layout based heuristic for weighted cluster editing
T Wittkop, J Baumbach, FP Lobo, S Rahmann
BMC bioinformatics 8 (1), 396, 2007
882007
CoryneRegNet 4.0–A reference database for corynebacterial gene regulatory networks
J Baumbach
BMC bioinformatics 8 (1), 429, 2007
772007
Analysis of the airway microbiota of healthy individuals and patients with chronic obstructive pulmonary disease by T-RFLP and clone sequencing
T Zakharkina, E Heinzel, RA Koczulla, T Greulich, K Rentz, JK Pauling, ...
PloS one 8 (7), 2013
762013
CoryneRegNet: an ontology-based data warehouse of corynebacterial transcription factors and regulatory networks
J Baumbach, K Brinkrolf, LF Czaja, S Rahmann, A Tauch
BMC genomics 7 (1), 24, 2006
762006
PIPS: pathogenicity island prediction software
SC Soares, VAC Abreu, RTJ Ramos, L Cerdeira, A Silva, J Baumbach, ...
PloS one 7 (2), 2012
702012
CoryneRegNet 6.0—Updated database content, new analysis methods and novel features focusing on community demands
J Pauling, R Röttger, A Tauch, V Azevedo, J Baumbach
Nucleic acids research 40 (D1), D610-D614, 2012
692012
Exact and heuristic algorithms for weighted cluster editing
S Rahmann, T Wittkop, J Baumbach, M Martin, A Truss, S Böcker
Computational Systems Bioinformatics: (Volume 6), 391-401, 2007
682007
Comprehensive cluster analysis with Transitivity Clustering
T Wittkop, D Emig, A Truss, M Albrecht, S Böcker, J Baumbach
Nature protocols 6 (3), 285-295, 2011
622011
GEDEVO: an evolutionary graph edit distance algorithm for biological network alignment
R Ibragimov, M Malek, J Guo, J Baumbach
German Conference on Bioinformatics 2013, 2013
562013
GIPSy: genomic island prediction software
SC Soares, H Geyik, RTJ Ramos, PHCG De Sá, EGV Barbosa, ...
Journal of biotechnology 232, 2-11, 2016
482016
Integrated analysis and reconstruction of microbial transcriptional gene regulatory networks using CoryneRegNet
J Baumbach, T Wittkop, CK Kleindt, A Tauch
Nature Protocols 4 (6), 992, 2009
482009
From Corynebacterium glutamicum to Mycobacterium tuberculosis—towards transfers of gene regulatory networks and integrated data analyses with MycoRegNet
J Krawczyk, TA Kohl, A Goesmann, J Kalinowski, J Baumbach
Nucleic acids research 37 (14), e97-e97, 2009
472009
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Articles 1–20