Nuno Rodrigues Faria

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Oliver PybusUniversity of Oxford / Royal Veterinary CollegeVerified email at zoo.ox.ac.uk
Philippe LemeyAssociate Professor, KU LeuvenVerified email at kuleuven.be
Ester Cerdeira SabinoUniversidade de Sao PauloVerified email at usp.br
Marc A. SuchardProfessor, University of California, Los AngelesVerified email at ucla.edu
Moritz U G KraemerAssociate Professor, University of OxfordVerified email at biology.ox.ac.uk
Darlan CândidoPhD candidate in Zoology, University of OxfordVerified email at merton.ox.ac.uk
Andrew RambautProfessor of Molecular Evolution, University of EdinburghVerified email at ed.ac.uk
Christopher DyeUniversity of OxfordVerified email at zoo.ox.ac.uk
Simon DellicourUniversity of Bruxelles (ULB), University of Leuven (KU Leuven)Verified email at ulb.ac.be
Ingra ClaroInstituto de Medicina Tropical de Sao Paulo - USPVerified email at usp.br
Jaqueline Goes de JesusUniversidade de São PauloVerified email at bahiana.edu.br
Sarah C HillResearch Fellow, Royal Veterinary College, UKVerified email at rvc.ac.uk
Ana AbecasisInstituto de Higiene e Medicina Tropical, Universidade Nova de LisboaVerified email at ihmt.unl.pt
Nicholas J LomanProfessor of Microbial Genomics and Bioinformatics, University of BirminghamVerified email at bham.ac.uk
Trevor BedfordProfessor, Fred Hutchinson Cancer Research CenterVerified email at bedford.io
Julien ThézéINRAE, Université Clermont AuvergneVerified email at inrae.fr
Andrea-Clemencia Pineda-PeñaSanofi: Global Clinical Development Vaccines; IHMT (Portugal); FIDIC (Colombia)Verified email at sanofi.com
William Marciel de SouzaUniversity of Texas Medical BranchVerified email at utmb.edu
Samir BhattProfessor of Machine Learning and Public Health University of CopenhagenVerified email at sund.ku.dk

Nuno Rodrigues Faria

Reader/Associate Professor, Imperial College, University of Oxford, University of São Paulo

Verified email at ic.ac.uk - Homepage

Virus Evolution Genomic Epidemiology Molecular Evolution Virology Phylogenetics


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The effect of human mobility and control measures on the COVID-19 epidemic in China MUG Kraemer, CH Yang, B Gutierrez, CH Wu, B Klein, DM Pigott, ... Science 368 (64), 493-497, 2020	2562	2020
Genomics and epidemiology of the P. 1 SARS-CoV-2 lineage in Manaus, Brazil NR Faria, TA Mellan, C Whittaker, IM Claro, DS Candido, S Mishra, ... Science 372 (6544), 815-821, 2021	1195	2021
Zika virus in the Americas: early epidemiological and genetic findings NR Faria, RSS Azevedo, MUG Kraemer, R Souza, MS Cunha, SC Hill, ... Science 352 (6283), 345-9, 2016	1104	2016
The early spread and epidemic ignition of HIV-1 in human populations NR Faria, A Rambaut, MA Suchard, G Baele, T Bedford, M Ward, ... Science 346 (6205), 56-61, 2014	857	2014
Resurgence of COVID-19 in Manaus, Brazil, despite high seroprevalence EC Sabino, LF Buss, MPS Carvalho, CA Prete Jr, MAE Crispim, NA Fraiji, ... The Lancet 397 (102), 452-455, 2021	821	2021
Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples J Quick, ND Grubaugh, ST Pullan, IM Claro, AD Smith, K Gangavarapu, ... Nature protocols 12 (6), 1261-1276, 2017	814	2017
Past and future spread of the arbovirus vectors Aedes aegypti and Aedes albopictus MUG Kraemer, RC Reiner Jr, OJ Brady, JP Messina, M Gilbert, DM Pigott, ... Nature Microbiology 4 (5), 901-901, 2019	631	2019
Evolution and epidemic spread of SARS-CoV-2 in Brazil DS Candido, IM Claro, JG de Jesus, WM de Souza, FRR Moreira, ... Science 369 (6508), 1255-1260, 2020	572*	2020
Establishment and cryptic transmission of Zika virus in Brazil and the Americas NR Faria, J Quick, I Morales, J Theze, JG de Jesus, M Giovanetti, ... Nature 546, 406-410, 2017	561	2017
Emergence and potential for spread of Chikungunya virus in Brazil MRT Nunes, NR Faria, JM de Vasconcelos, N Golding, MUG Kraemer, ... BMC Medicine 13 (1), 1, 2015	521	2015
Three-quarters attack rate of SARS-CoV-2 in the Brazilian Amazon during a largely unmitigated epidemic LF Buss, CA Prete, CMM Abrahim, A Mendrone, T Salomon, ... Science 371 (6526), 288-292, 2021	498	2021
Genomic characterisation of an emergent SARS-CoV-2 lineage in Manaus: preliminary findings NR Faria, IM Claro, D Candido, LAM Franco, PS Andrade, TM Coletti, ... Virological 372, 815-821, 2021	469*	2021
Improving Bayesian population dynamics inference: a coalescent-based model for multiple loci MS Gill, P Lemey, NR Faria, A Rambaut, B Shapiro, MA Suchard Molecular Biology and Evolution 30 (3), 713-724, 2013	451	2013
Virus genomes reveal factors that spread and sustained the Ebola epidemic G Dudas, LM Carvalho, T Bedford, AJ Tatem, G Baele, NR Faria, DJ Park, ... Nature 544 (7650), 309-315, 2017	388	2017
Epidemiological and clinical characteristics of the early phase of the COVID-19 epidemic in Brazil WM de Souza, LF Buss, D da Silva Candido, JP Carrera, S Li, A Zarebski, ... Nature Human Behaviour, 856-865, 2020	370	2020
Automated subtyping of HIV-1 genetic sequences for clinical and surveillance purposes: performance evaluation of the new REGA version 3 and seven other tools AC Pineda-Peña, NR Faria, S Imbrechts, P Libin, AB Abecasis, ... Infect Genet Evol 19, 337-348, 2013	353	2013
Unifying viral genetics and human transportation data to predict the global transmission dynamics of human influenza H3N2 P Lemey, A Rambaut, T Bedford, NR Faria, F Bielejec, G Baele, ... PloS Pathogens 10 (2), e1003932, 2014	347	2014
Genomic epidemiology reveals multiple introductions of Zika virus into the United States ND Grubaugh, JT Ladner, MUG Kraemer, G Dudas, AL Tan, ... Nature, 104794, 2017	324	2017
Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK L du Plessis, JT McCrone, AE Zarebski, V Hill, C Ruis, B Gutierrez, ... Science, eabf2946, 2021	302	2021
The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time L Josefsson, S Von Stockenstrom, NR Faria, E Sinclair, P Bacchetti, ... Proceedings of the National Academy of Sciences 110 (51), E4987-E4996, 2013	299	2013

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