Philipp Bucher
Philipp Bucher
Group leader in Bioinformatics, EPFL and Swiss Institute of Bioinformatics, Lausanne
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InterProScan–an integration platform for the signature-recognition methods in InterPro
EM Zdobnov, R Apweiler
Bioinformatics 17 (9), 847, 2001
Weight matrix descriptions of four eukaryotic RNA polymerase II promoter elements derived from 502 unrelated promoter sequences
P Bucher
Journal of molecular biology 212 (4), 563-578, 1990
The PROSITE database, its status in 1999
K Hofmann, P Bucher, L Falquet, A Bairoch
Nucleic Acids Research 27 (1), 215-219, 1999
The PROSITE database, its status in 2002
L Falquet, M Pagni, P Bucher, N Hulo, CJA Sigrist, K Hofmann, A Bairoch
Nucleic acids research 30 (1), 235-238, 2002
The InterPro database, an integrated documentation resource for protein families, domains and functional sites
R Apweiler, TK Attwood, A Bairoch, A Bateman, E Birney, M Biswas, ...
Nucleic acids research 29 (1), 37-40, 2001
ESTScan: a program for detecting, evaluating, and reconstructing potential coding regions in EST sequences
C Iseli, CV Jongeneel, P Bucher
Proc Int Conf Intell Syst Mol Biol 7, 138-148, 1999
PROSITE: a documented database using patterns and profiles as motif descriptors
CJA Sigrist, L Cerutti, N Hulo, A Gattiker, L Falquet, M Pagni, A Bairoch, ...
Briefings in bioinformatics 3 (3), 265-274, 2002
The PROSITE database, its status in 1997
A Bairoch, P Bucher, K Hofmann
Nucleic Acids Research 25 (1), 217, 1997
A superfamily of conserved domains in DNA damage-responsive cell cycle checkpoint proteins
P Bork, K Hofmann, P Bucher, AF Neuwald, SF Altschul, EV Koonin
The FASEB journal 11 (1), 68, 1997
The InterPro Database, 2003 brings increased coverage and new features
NJ Mulder, R Apweiler, TK Attwood, A Bairoch, D Barrell, A Bateman, ...
Nucleic acids research 31 (1), 315-318, 2003
Assessment of transcript reconstruction methods for RNA-seq
T Steijger, JF Abril, PG Engström, F Kokocinski, TJ Hubbard, R Guigó, ...
Nature methods 10 (12), 1177-1184, 2013
The CARD domain: a new apoptotic signalling motif.
K Hofmann, P Bucher, J Tschopp
Trends in biochemical sciences 22 (5), 155, 1997
InterPro, progress and status in 2005
NJ Mulder, R Apweiler, TK Attwood, A Bairoch, A Bateman, D Binns, ...
Nucleic acids research 33 (suppl_1), D201-D205, 2005
Critical assessment of automated flow cytometry data analysis techniques
N Aghaeepour, G Finak, FlowCAP Consortium, Dream Consortium, ...
Nature methods 10 (3), 228-238, 2013
Recent improvements to the PROSITE database
N Hulo, CJA Sigrist, V Le Saux, PS Langendijk‐Genevaux, L Bordoli, ...
Nucleic Acids Research 32 (suppl_1), D134-D137, 2004
The UBA domain: a sequence motif present in multiple enzyme classes of the ubiquitination pathway.
K Hofmann, P Bucher
Trends in biochemical sciences 21 (5), 172, 1996
Methods and algorithms for statistical analysis of protein sequences
V Brendel, P Bucher, IR Nourbakhsh, BE Blaisdell, S Karlin
Proceedings of the National Academy of Sciences 89 (6), 2002, 1992
DNA binding specificity of different STAT proteins
GB Ehret, P Reichenbach, U Schindler, CM Horvath, S Fritz, M Nabholz, ...
Journal of Biological Chemistry 276 (9), 6675, 2001
The FHA domain: a putative nuclear signalling domain found in protein kinases and transcription factors
K Hofmann, P Bucher
Trends in biochemical sciences 20 (9), 347-349, 1995
Compilation and analysis of eukaryotic POL II promoter sequences
P Bucher, EN Trifonov
Nucleic acids research 14 (24), 10009, 1986
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