Adam Feist
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Year
A genome‐scale metabolic reconstruction for Escherichia coli K‐12 MG1655 that accounts for 1260 ORFs and thermodynamic information
AM Feist, CS Henry, JL Reed, M Krummenacker, AR Joyce, PD Karp, ...
Molecular systems biology 3 (1), 121, 2007
14872007
Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2. 0
J Schellenberger, R Que, RMT Fleming, I Thiele, JD Orth, AM Feist, ...
Nature protocols 6 (9), 1290, 2011
13192011
Reconstruction of biochemical networks in microorganisms
AM Feist, MJ Herrgård, I Thiele, JL Reed, BØ Palsson
Nature Reviews Microbiology 7 (2), 129-143, 2009
9372009
A comprehensive genome‐scale reconstruction of Escherichia coli metabolism—2011
JD Orth, TM Conrad, J Na, JA Lerman, H Nam, AM Feist, BØ Palsson
Molecular systems biology 7 (1), 535, 2011
9142011
Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox
SA Becker, AM Feist, ML Mo, G Hannum, BØ Palsson, MJ Herrgard
Nature protocols 2 (3), 727-738, 2007
8902007
The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli
AM Feist, BØ Palsson
Nature biotechnology 26 (6), 659-667, 2008
6012008
The biomass objective function
AM Feist, BO Palsson
Current opinion in microbiology 13 (3), 344-349, 2010
5152010
Basic and applied uses of genome‐scale metabolic network reconstructions of Escherichia coli
D McCloskey, BØ Palsson, AM Feist
Molecular systems biology 9 (1), 661, 2013
3362013
Tracing compartmentalized NADPH metabolism in the cytosol and mitochondria of mammalian cells
CA Lewis, SJ Parker, BP Fiske, D McCloskey, DY Gui, CR Green, ...
Molecular cell 55 (2), 253-263, 2014
3212014
Modeling methanogenesis with a genome‐scale metabolic reconstruction of Methanosarcina barkeri
AM Feist, JCM Scholten, BØ Palsson, FJ Brockman, T Ideker
Molecular systems biology 2 (1), 2006.0004, 2006
2632006
Model-driven evaluation of the production potential for growth-coupled products of Escherichia coli
AM Feist, DC Zielinski, JD Orth, J Schellenberger, MJ Herrgard, ...
Metabolic engineering 12 (3), 173-186, 2010
2232010
Genome-scale metabolic reconstructions of multiple Escherichia coli strains highlight strain-specific adaptations to nutritional environments
JM Monk, P Charusanti, RK Aziz, JA Lerman, N Premyodhin, JD Orth, ...
Proceedings of the National Academy of Sciences 110 (50), 20338-20343, 2013
1982013
Genome-scale reconstruction and in silico analysis of the Clostridium acetobutylicum ATCC 824 metabolic network
J Lee, H Yun, AM Feist, BØ Palsson, SY Lee
Applied microbiology and biotechnology 80 (5), 849-862, 2008
1972008
A multi-tissue type genome-scale metabolic network for analysis of whole-body systems physiology
A Bordbar, AM Feist, R Usaite-Black, J Woodcock, BO Palsson, I Famili
BMC systems biology 5 (1), 180, 2011
1742011
Next-generation genome-scale models for metabolic engineering
ZA King, CJ Lloyd, AM Feist, BO Palsson
Current opinion in biotechnology 35, 23-29, 2015
1512015
Use of adaptive laboratory evolution to discover key mutations enabling rapid growth of Escherichia coli K-12 MG1655 on glucose minimal medium
RA LaCroix, TE Sandberg, EJ O'Brien, J Utrilla, A Ebrahim, GI Guzman, ...
Applied and environmental microbiology 81 (1), 17-30, 2015
1402015
i ML1515, a knowledgebase that computes Escherichia coli traits
JM Monk, CJ Lloyd, E Brunk, N Mih, A Sastry, Z King, R Takeuchi, ...
Nature biotechnology 35 (10), 904-908, 2017
1382017
Generation of an atlas for commodity chemical production in Escherichia coli and a novel pathway prediction algorithm, GEM-Path
MA Campodonico, BA Andrews, JA Asenjo, BO Palsson, AM Feist
Metabolic engineering 25, 140-158, 2014
1342014
Maximizing biomass productivity and cell density of Chlorella vulgaris by using light-emitting diode-based photobioreactor
W Fu, O Gudmundsson, AM Feist, G Herjolfsson, S Brynjolfsson, ...
Journal of biotechnology 161 (3), 242-249, 2012
1112012
Evolution of Escherichia coli to 42 °C and Subsequent Genetic Engineering Reveals Adaptive Mechanisms and Novel Mutations
TE Sandberg, M Pedersen, RA LaCroix, A Ebrahim, M Bonde, ...
Molecular biology and evolution 31 (10), 2647-2662, 2014
1022014
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