| A genome‐scale metabolic reconstruction for Escherichia coli K‐12 MG1655 that accounts for 1260 ORFs and thermodynamic information AM Feist, CS Henry, JL Reed, M Krummenacker, AR Joyce, PD Karp, ... Molecular systems biology 3 (1), 121, 2007 | 1632 | 2007 |
| Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2. 0 J Schellenberger, R Que, RMT Fleming, I Thiele, JD Orth, AM Feist, ... Nature protocols 6 (9), 1290-1307, 2011 | 1487 | 2011 |
| A comprehensive genome‐scale reconstruction of Escherichia coli metabolism—2011 JD Orth, TM Conrad, J Na, JA Lerman, H Nam, AM Feist, BØ Palsson Molecular systems biology 7 (1), 535, 2011 | 1095 | 2011 |
| Reconstruction of biochemical networks in microorganisms AM Feist, MJ Herrgård, I Thiele, JL Reed, BØ Palsson Nature Reviews Microbiology 7 (2), 129-143, 2009 | 1018 | 2009 |
| Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox SA Becker, AM Feist, ML Mo, G Hannum, BØ Palsson, MJ Herrgard Nature protocols 2 (3), 727-738, 2007 | 973 | 2007 |
| The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli AM Feist, BØ Palsson Nature biotechnology 26 (6), 659-667, 2008 | 650 | 2008 |
| The biomass objective function AM Feist, BO Palsson Current opinion in microbiology 13 (3), 344-349, 2010 | 644 | 2010 |
| Tracing compartmentalized NADPH metabolism in the cytosol and mitochondria of mammalian cells CA Lewis, SJ Parker, BP Fiske, D McCloskey, DY Gui, CR Green, ... Molecular cell 55 (2), 253-263, 2014 | 453 | 2014 |
| Basic and applied uses of genome‐scale metabolic network reconstructions of Escherichia coli D McCloskey, BØ Palsson, AM Feist Molecular systems biology 9 (1), 661, 2013 | 380 | 2013 |
| Modeling methanogenesis with a genome‐scale metabolic reconstruction of Methanosarcina barkeri AM Feist, JCM Scholten, BØ Palsson, FJ Brockman, T Ideker Molecular systems biology 2 (1), 2006.0004, 2006 | 291 | 2006 |
| iML1515, a knowledgebase that computes Escherichia coli traits JM Monk, CJ Lloyd, E Brunk, N Mih, A Sastry, Z King, R Takeuchi, ... Nature biotechnology 35 (10), 904-908, 2017 | 273 | 2017 |
| Genome-scale metabolic reconstructions of multiple Escherichia coli strains highlight strain-specific adaptations to nutritional environments JM Monk, P Charusanti, RK Aziz, JA Lerman, N Premyodhin, JD Orth, ... Proceedings of the National Academy of Sciences 110 (50), 20338-20343, 2013 | 261 | 2013 |
| Model-driven evaluation of the production potential for growth-coupled products of Escherichia coli AM Feist, DC Zielinski, JD Orth, J Schellenberger, MJ Herrgard, ... Metabolic engineering 12 (3), 173-186, 2010 | 261 | 2010 |
| Genome-scale reconstruction and in silico analysis of the Clostridium acetobutylicum ATCC 824 metabolic network J Lee, H Yun, AM Feist, BØ Palsson, SY Lee Applied microbiology and biotechnology 80 (5), 849-862, 2008 | 206 | 2008 |
| A multi-tissue type genome-scale metabolic network for analysis of whole-body systems physiology A Bordbar, AM Feist, R Usaite-Black, J Woodcock, BO Palsson, I Famili BMC systems biology 5 (1), 1-17, 2011 | 204 | 2011 |
| The emergence of adaptive laboratory evolution as an efficient tool for biological discovery and industrial biotechnology TE Sandberg, MJ Salazar, LL Weng, BO Palsson, AM Feist Metabolic engineering 56, 1-16, 2019 | 185 | 2019 |
| Next-generation genome-scale models for metabolic engineering ZA King, CJ Lloyd, AM Feist, BO Palsson Current opinion in biotechnology 35, 23-29, 2015 | 185 | 2015 |
| Use of adaptive laboratory evolution to discover key mutations enabling rapid growth of Escherichia coli K-12 MG1655 on glucose minimal medium RA LaCroix, TE Sandberg, EJ O'Brien, J Utrilla, A Ebrahim, GI Guzman, ... Applied and environmental microbiology 81 (1), 17-30, 2015 | 185 | 2015 |
| Generation of an atlas for commodity chemical production in Escherichia coli and a novel pathway prediction algorithm, GEM-Path MA Campodonico, BA Andrews, JA Asenjo, BO Palsson, AM Feist Metabolic engineering 25, 140-158, 2014 | 169 | 2014 |
| MEMOTE for standardized genome-scale metabolic model testing C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ... Nature biotechnology 38 (3), 272-276, 2020 | 154 | 2020 |
Bernhard PalssonUCSDVerified email at eng.ucsd.edu
