Arkady Khodursky
Arkady Khodursky
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Comparative Gene Expression Profiles Following UV Exposure in Wild-Type and SOS-Deficient Escherichia coli
J Courcelle, A Khodursky, B Peter, PO Brown, PC Hanawalt
Genetics 158 (1), 41-64, 2001
Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays
JA Bernstein, AB Khodursky, PH Lin, S Lin-Chao, SN Cohen
Proceedings of the National Academy of Sciences 99 (15), 9697-9702, 2002
Persisters: a distinct physiological state of E. coli
D Shah, Z Zhang, AB Khodursky, N Kaldalu, K Kurg, K Lewis
BMC microbiology 6 (1), 1-9, 2006
Topoisomerase IV is a target of quinolones in Escherichia coli
AB Khodursky, EL Zechiedrich, NR Cozzarelli
Proceedings of the National Academy of Sciences 92 (25), 11801-11805, 1995
Nitrogen regulatory protein C-controlled genes of Escherichia coli: scavenging as a defense against nitrogen limitation
DP Zimmer, E Soupene, HL Lee, VF Wendisch, AB Khodursky, BJ Peter, ...
Proceedings of the National Academy of Sciences 97 (26), 14674-14679, 2000
Roles of topoisomerases in maintaining steady-state DNA supercoiling in Escherichia coli
EL Zechiedrich, AB Khodursky, S Bachellier, R Schneider, D Chen, ...
Journal of Biological Chemistry 275 (11), 8103-8113, 2000
Overflow metabolism in Escherichia coli during steady-state growth: transcriptional regulation and effect of the redox ratio
GN Vemuri, E Altman, DP Sangurdekar, AB Khodursky, MA Eiteman
Applied and environmental microbiology 72 (5), 3653-3661, 2006
Genomic transcriptional response to loss of chromosomal supercoiling in Escherichia coli
BJ Peter, J Arsuaga, AM Breier, AB Khodursky, PO Brown, NR Cozzarelli
Genome biology 5 (11), 1-16, 2004
DNA microarray analysis of gene expression in response to physiological and genetic changes that affect tryptophan metabolism in Escherichia coli
AB Khodursky, BJ Peter, NR Cozzarelli, D Botstein, PO Brown, ...
Proceedings of the National Academy of Sciences 97 (22), 12170-12175, 2000
Adaptation to famine: a family of stationary-phase genes revealed by microarray analysis
TH Tani, A Khodursky, RM Blumenthal, PO Brown, RG Matthews
Proceedings of the National Academy of Sciences 99 (21), 13471-13476, 2002
Topoisomerase IV, not gyrase, decatenates products of site-specific recombination inEscherichia coli
EL Zechiedrich, AB Khodursky, NR Cozzarelli
Genes & development 11 (19), 2580-2592, 1997
Analysis of topoisomerase function in bacterial replication fork movement: use of DNA microarrays
AB Khodursky, BJ Peter, MB Schmid, J DeRisi, D Botstein, PO Brown, ...
Proceedings of the National Academy of Sciences 97 (17), 9419-9424, 2000
The mechanism of inhibition of topoisomerase IV by quinolone antibacterials
AB Khodursky, NR Cozzarelli
Journal of Biological Chemistry 273 (42), 27668-27677, 1998
Spatial patterns of transcriptional activity in the chromosome of Escherichia coli
KS Jeong, J Ahn, AB Khodursky
Genome biology 5 (11), 1-10, 2004
A note on using permutation-based false discovery rate estimates to compare different analysis methods for microarray data
Y Xie, W Pan, AB Khodursky
Bioinformatics 21 (23), 4280-4288, 2005
Evolutionary genomics of ecological specialization
S Zhong, A Khodursky, DE Dykhuizen, AM Dean
Proceedings of the National Academy of Sciences 101 (32), 11719-11724, 2004
Isolation of Escherichia coli mRNA and comparison of expression using mRNA and total RNA on DNA microarrays
VF Wendisch, DP Zimmer, A Khodursky, B Peter, N Cozzarelli, S Kustu
Analytical biochemistry 290 (2), 205-213, 2001
Escherichia coli Spotted Double-Strand DNA Microarrays
AB Khodursky, JA Bernstein, BJ Peter, V Rhodius, VF Wendisch, ...
Functional Genomics, 61-78, 2003
A classification based framework for quantitative description of large-scale microarray data
DP Sangurdekar, F Srienc, AB Khodursky
Genome biology 7 (4), 1-17, 2006
Gene expression patterns of sulfur starvation in Synechocystis sp. PCC 6803
Z Zhang, ND Pendse, KN Phillips, JB Cotner, A Khodursky
BMC genomics 9 (1), 1-14, 2008
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