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Shadi Shafighi
Shadi Shafighi
Cambridge University, Cancer Research UK Cambridge Institute
Verified email at cruk.cam.ac.uk
Title
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Year
Celloscope: a probabilistic model for marker-gene-driven cell type deconvolution in spatial transcriptomics data
A Geras, S Darvish Shafighi, K Domżał, I Filipiuk, A Rączkowska, ...
Genome Biology 24 (1), 120, 2023
152023
CACTUS: integrating clonal architecture with genomic clustering and transcriptome profiling of single tumor cells
SD Shafighi, SM Kiełbasa, J Sepúlveda-Yáńez, R Monajemi, D Cats, ...
Genome medicine 13, 1-16, 2021
9*2021
Integrative spatial and genomic analysis of tumor heterogeneity with Tumoroscope
S Shafighi, A Geras, B Jurzysta, A Sahaf Naeini, I Filipiuk, ...
Nature Communications 15 (1), 9343, 2024
5*2024
CaClust: linking genotype to transcriptional heterogeneity of follicular lymphoma using BCR and exomic variants
K Oksza-Orzechowski, E Quinten, S Shafighi, SM Kiełbasa, ...
Genome Biology 25 (1), 286, 2024
12024
Author Correction: Integrative spatial and genomic analysis of tumor heterogeneity with Tumoroscope
S Shafighi, A Geras, B Jurzysta, AS Naeini, I Filipiuk, A Rączkowska, ...
Nature Communications 16, 2801, 2025
2025
an, Groen, R
K Oksza-Orzechowski, E Quinten, S Shafighi, SM Kielbasa, HW Kessel
L. de,… Szczurek, E, 2024
2024
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Articles 1–6