Christopher Tomkins-Tinch
Christopher Tomkins-Tinch
Broad Institute of MIT and Harvard
Verified email at
Cited by
Cited by
Structural and functional analysis of the D614G SARS-CoV-2 spike protein variant
L Yurkovetskiy, X Wang, KE Pascal, C Tomkins-Tinch, TP Nyalile, Y Wang, ...
Cell 183 (3), 739-751. e8, 2020
Sustainable data analysis with Snakemake
F Mölder, KP Jablonski, B Letcher, MB Hall, CH Tomkins-Tinch, V Sochat, ...
F1000Research 10, 2021
Bioconda: sustainable and comprehensive software distribution for the life sciences
B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ...
Nature methods 15 (7), 475-476, 2018
Zika virus evolution and spread in the Americas
HC Metsky, CB Matranga, S Wohl, SF Schaffner, CA Freije, SM Winnicki, ...
Nature 546 (7658), 411-415, 2017
Genomic epidemiology reveals multiple introductions of Zika virus into the United States
ND Grubaugh, JT Ladner, MUG Kraemer, G Dudas, AL Tan, ...
Nature 546 (7658), 401-405, 2017
Ebola virus epidemiology, transmission, and evolution during seven months in Sierra Leone
DJ Park, G Dudas, S Wohl, A Goba, SLM Whitmer, KG Andersen, ...
Cell 161 (7), 1516-1526, 2015
Phylogenetic analysis of SARS-CoV-2 in Boston highlights the impact of superspreading events
JE Lemieux, KJ Siddle, BM Shaw, C Loreth, SF Schaffner, ...
Science 371 (6529), eabe3261, 2021
Comparative transmissibility of SARS-CoV-2 variants delta and alpha in New England, USA
R Earnest, R Uddin, N Matluk, N Renzette, SE Turbett, KJ Siddle, C Loreth, ...
Cell Reports Medicine 3 (4), 2022
Profiling SARS-CoV-2 HLA-I peptidome reveals T cell epitopes from out-of-frame ORFs
S Weingarten-Gabbay, S Klaeger, S Sarkizova, LR Pearlman, DY Chen, ...
Cell 184 (15), 3962-3980. e17, 2021
Sustainable data analysis with Snakemake. F1000Res 10: 33
F Mölder, KP Jablonski, B Letcher, MB Hall, CH Tomkins-Tinch, V Sochat, ...
Transmission from vaccinated individuals in a large SARS-CoV-2 Delta variant outbreak
KJ Siddle, LA Krasilnikova, GK Moreno, SF Schaffner, J Vostok, ...
Cell 185 (3), 485-492. e10, 2022
Sensorpedia: Information sharing across incompatible sensor systems
BL Gorman, DR Resseguie, C Tomkins-Tinch
2009 International Symposium on Collaborative Technologies and Systems, 448-454, 2009
Ebola virus epidemiology and evolution in Nigeria
OA Folarin, D Ehichioya, SF Schaffner, SM Winnicki, S Wohl, P Eromon, ...
The Journal of infectious diseases 214 (suppl_3), S102-S109, 2016
Powassan virus neuropathology and genomic diversity in patients with fatal encephalitis
E Normandin, IH Solomon, S Zamirpour, J Lemieux, CA Freije, SS Mukerji, ...
Open Forum Infectious Diseases 7 (10), ofaa392, 2020
Genomic investigation of a dengue virus outbreak in Thiès, Senegal, in 2018
A Gaye, T Ndiaye, M Sy, AB Deme, AB Thiaw, A Sene, C Ndiaye, ...
Scientific Reports 11 (1), 10321, 2021
Multimodal surveillance of SARS-CoV-2 at a university enables development of a robust outbreak response framework
BA Petros, JS Paull, CH Tomkins-Tinch, BC Loftness, KC DeRuff, P Nair, ...
Med 3 (12), 883-900. e13, 2022
SARS-CoV-2 reinfection in a liver transplant recipient
CH Tomkins-Tinch, JS Daly, A Gladden-Young, NM Theodoropoulos, ...
Annals of Internal Medicine 174 (8), 1178-1180, 2021
The origins and future of sentinel: an early-warning system for pandemic preemption and response
Y Botti-Lodovico, P Nair, D Nosamiefan, M Stremlau, S Schaffner, ...
Viruses 13 (8), 1605, 2021
Automated sample processing, fluid distribution, and sedimentation assay
U Schaff, C Tomkins-Tinch, J Sauers, G Sommer
US Patent 10,376,877, 2019
Utilizing river and wastewater as a SARS-CoV-2 surveillance tool in settings with limited formal sewage systems
KG Barnes, JI Levy, J Gauld, J Rigby, O Kanjerwa, CB Uzzell, ...
Nature communications 14 (1), 7883, 2023
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