|Gut metagenome in European women with normal, impaired and diabetic glucose control|
FH Karlsson, V Tremaroli, I Nookaew, G Bergström, CJ Behre, ...
Nature 498 (7452), 99, 2013
|A community-driven global reconstruction of human metabolism|
I Thiele, N Swainston, RMT Fleming, A Hoppe, S Sahoo, MK Aurich, ...
Nature biotechnology 31 (5), 419-425, 2013
|Symptomatic atherosclerosis is associated with an altered gut metagenome|
FH Karlsson, F Fåk, I Nookaew, V Tremaroli, B Fagerberg, D Petranovic, ...
Nature communications 3 (1), 1-8, 2012
|Insights from 20 years of bacterial genome sequencing|
M Land, L Hauser, SR Jun, I Nookaew, MR Leuze, TH Ahn, T Karpinets, ...
Functional & integrative genomics 15 (2), 141-161, 2015
|Enriching the gene set analysis of genome-wide data by incorporating directionality of gene expression and combining statistical hypotheses and methods|
L Väremo, J Nielsen, I Nookaew
Nucleic acids research 41 (8), 4378-4391, 2013
|Voluntary running suppresses tumor growth through epinephrine-and IL-6-dependent NK cell mobilization and redistribution|
L Pedersen, M Idorn, GH Olofsson, B Lauenborg, I Nookaew, RH Hansen, ...
Cell metabolism 23 (3), 554-562, 2016
|The RAVEN toolbox and its use for generating a genome-scale metabolic model for Penicillium chrysogenum|
R Agren, L Liu, S Shoaie, W Vongsangnak, I Nookaew, J Nielsen
PLoS Comput Biol 9 (3), e1002980, 2013
|Reconstruction of genome-scale active metabolic networks for 69 human cell types and 16 cancer types using INIT|
R Agren, S Bordel, A Mardinoglu, N Pornputtapong, I Nookaew, J Nielsen
PLoS Comput Biol 8 (5), e1002518, 2012
|A comprehensive comparison of RNA-Seq-based transcriptome analysis from reads to differential gene expression and cross-comparison with microarrays: a case study in …|
I Nookaew, M Papini, N Pornputtapong, G Scalcinati, L Fagerberg, ...
Nucleic acids research 40 (20), 10084-10097, 2012
|Analysis of gut microbial regulation of host gene expression along the length of the gut and regulation of gut microbial ecology through MyD88|
E Larsson, V Tremaroli, YS Lee, O Koren, I Nookaew, A Fricker, J Nielsen, ...
gut 61 (8), 1124-1131, 2012
|Understanding the interactions between bacteria in the human gut through metabolic modeling|
S Shoaie, F Karlsson, A Mardinoglu, I Nookaew, S Bordel, J Nielsen
Scientific reports 3 (1), 1-10, 2013
|Integration of clinical data with a genome‐scale metabolic model of the human adipocyte|
A Mardinoglu, R Agren, C Kampf, A Asplund, I Nookaew, P Jacobson, ...
Molecular systems biology 9 (1), 649, 2013
|The genome-scale metabolic model iIN800 of Saccharomyces cerevisiae and its validation: a scaffold to query lipid metabolism|
I Nookaew, MC Jewett, A Meechai, C Thammarongtham, K Laoteng, ...
BMC systems biology 2 (1), 1-15, 2008
|Fifteen years of large scale metabolic modeling of yeast: developments and impacts|
T Österlund, I Nookaew, J Nielsen
Biotechnology advances 30 (5), 979-988, 2012
|Genome-scale metabolic reconstructions of Pichia stipitis and Pichia pastoris and in silico evaluation of their potentials|
L Caspeta, S Shoaie, R Agren, I Nookaew, J Nielsen
BMC systems biology 6 (1), 1-14, 2012
|MEMOTE for standardized genome-scale metabolic model testing|
C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ...
Nature biotechnology 38 (3), 272-276, 2020
|Chromosome 3p loss of heterozygosity is associated with a unique metabolic network in clear cell renal carcinoma|
F Gatto, I Nookaew, J Nielsen
Proceedings of the National Academy of Sciences 111 (9), E866-E875, 2014
|BioMet Toolbox: genome-wide analysis of metabolism|
M Cvijovic, R Olivares-Hernï¿ ½ndez, R Agren, N Dahr, W Vongsangnak, ...
Nucleic acids research 38 (suppl_2), W144-W149, 2010
|Mapping condition-dependent regulation of metabolism in yeast through genome-scale modeling|
T Österlund, I Nookaew, S Bordel, J Nielsen
BMC systems biology 7 (1), 1-10, 2013
|Site-specific programming of the host epithelial transcriptome by the gut microbiota|
F Sommer, I Nookaew, N Sommer, P Fogelstrand, F Bäckhed
Genome biology 16 (1), 1-15, 2015