Björn Usadel
Björn Usadel
Professor of Biological Data Science,Heinrich-Heine-University Düsseldorf, Forschungszentrum Jülich
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Trimmomatic: a flexible trimmer for Illumina sequence data
AM Bolger, M Lohse, B Usadel
Bioinformatics 30 (15), 2114-2120, 2014
GMD@ CSB. DB: the Golm metabolome database
J Kopka, N Schauer, S Krueger, C Birkemeyer, B Usadel, E Bergmüller, ...
Bioinformatics 21 (8), 1635-1638, 2005
RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics
M Lohse, AM Bolger, A Nagel, AR Fernie, JE Lunn, M Stitt, B Usadel
Nucleic acids research 40 (W1), W622-W627, 2012
Sugars and circadian regulation make major contributions to the global regulation of diurnal gene expression in Arabidopsis
OE Bläsing, Y Gibon, M Günther, M Höhne, R Morcuende, D Osuna, ...
The Plant Cell 17 (12), 3257-3281, 2005
Extension of the visualization tool MapMan to allow statistical analysis of arrays, display of coresponding genes, and comparison with known responses
B Usadel, A Nagel, O Thimm, H Redestig, OE Blaesing, N Palacios-Rojas, ...
Plant physiology 138 (3), 1195-1204, 2005
Genome‐wide reprogramming of metabolism and regulatory networks of Arabidopsis in response to phosphorus
R Morcuende, R Bari, Y Gibon, W Zheng, BD PANT, O BLÄSING, ...
Plant, Cell & Environment 30 (1), 85-112, 2007
A guide to using MapMan to visualize and compare Omics data in plants: a case study in the crop species, Maize
B Usadel, F Poree, A Nagel, M Lohse, A CZEDIK‐EYSENBERG, M Stitt
Plant, cell & environment 32 (9), 1211-1229, 2009
Mercator: a fast and simple web server for genome scale functional annotation of plant sequence data
M Lohse, A Nagel, T Herter, P May, M Schroda, R Zrenner, T Tohge, ...
Plant, cell & environment 37 (5), 1250-1258, 2014
Starch as a major integrator in the regulation of plant growth
R Sulpice, ET Pyl, H Ishihara, S Trenkamp, M Steinfath, H Witucka-Wall, ...
Proceedings of the National Academy of Sciences 106 (25), 10348-10353, 2009
Integrated analysis of metabolite and transcript levels reveals the metabolic shifts that underlie tomato fruit development and highlight regulatory aspects of metabolic …
F Carrari, C Baxter, B Usadel, E Urbanczyk-Wochniak, MI Zanor, ...
Plant Physiology 142 (4), 1380-1396, 2006
Co‐expression tools for plant biology: opportunities for hypothesis generation and caveats
Plant, Cell & Environment 32 (12), 1633-1651, 2009
The genome of the stress-tolerant wild tomato species Solanum pennellii
A Bolger, F Scossa, ME Bolger, C Lanz, F Maumus, T Tohge, ...
Nature genetics 46 (9), 1034-1038, 2014
Quantitation in mass-spectrometry-based proteomics
WX Schulze, B Usadel
Annual review of plant biology 61 (1), 491-516, 2010
Reprogramming a maize plant: transcriptional and metabolic changes induced by the fungal biotroph Ustilago maydis
G Doehlemann, R Wahl, RJ Horst, LM Voll, B Usadel, F Poree, M Stitt, ...
The Plant Journal 56 (2), 181-195, 2008
Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato
D Koenig, JM Jiménez-Gómez, S Kimura, D Fulop, DH Chitwood, ...
Proceedings of the National Academy of Sciences 110 (28), E2655-E2662, 2013
Arabidopsis and primary photosynthetic metabolism–more than the icing on the cake
M Stitt, J Lunn, B Usadel
The Plant Journal 61 (6), 1067-1091, 2010
PageMan: an interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments
B Usadel, A Nagel, D Steinhauser, Y Gibon, OE Bläsing, H Redestig, ...
BMC bioinformatics 7, 1-8, 2006
Systems Biology of Tomato Fruit Development: Combined Transcript, Protein, and Metabolite Analysis of Tomato Transcription Factor (nor, rin) and Ethylene Receptor (Nr) Mutants …
S Osorio, R Alba, CMB Damasceno, G Lopez-Casado, M Lohse, MI Zanor, ...
Plant physiology 157 (1), 405-425, 2011
Global transcript levels respond to small changes of the carbon status during progressive exhaustion of carbohydrates in Arabidopsis rosettes
B Usadel, OE Bläsing, Y Gibon, K Retzlaff, M Höhne, M Günther, M Stitt
Plant Physiology 146 (4), 1834-1861, 2008
Integration of metabolite with transcript and enzyme activity profiling during diurnal cycles in Arabidopsis rosettes
Y Gibon, B Usadel, OE Blaesing, B Kamlage, M Hoehne, R Trethewey, ...
Genome Biology 7 (8), R76, 2006
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