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Manuel Gil
Manuel Gil
Head of Biomedical String Analysis, ZHAW
Verified email at zhaw.ch
Title
Cited by
Cited by
Year
Survey of branch support methods demonstrates accuracy, power, and robustness of fast likelihood-based approximation schemes
M Anisimova, M Gil, JF Dufayard, C Dessimoz, O Gascuel
Systematic biology 60 (5), 685-699, 2011
7722011
β-AMYLASE4, a Noncatalytic Protein Required for Starch Breakdown, Acts Upstream of Three Active β-Amylases in Arabidopsis Chloroplasts
DC Fulton, M Stettler, T Mettler, CK Vaughan, J Li, P Francisco, M Gil, ...
The Plant Cell 20 (4), 1040-1058, 2008
3132008
Current methods for automated filtering of multiple sequence alignments frequently worsen single-gene phylogenetic inference
G Tan, M Muffato, C Ledergerber, J Herrero, N Goldman, M Gil, ...
Systematic biology 64 (5), 778-791, 2015
1812015
Inferring hierarchical orthologous groups from orthologous gene pairs
AM Altenhoff, M Gil, GH Gonnet, C Dessimoz
PloS one 8 (1), e53786, 2013
1522013
Phylogenetic assessment of alignments reveals neglected tree signal in gaps
C Dessimoz, M Gil
Genome biology 11 (4), 1-9, 2010
1252010
CodonPhyML: fast maximum likelihood phylogeny estimation under codon substitution models
M Gil, MS Zanetti, S Zoller, M Anisimova
Molecular biology and evolution 30 (6), 1270-1280, 2013
1052013
OMA, a comprehensive, automated project for the identification of orthologs from complete genome data: introduction and first achievements
C Dessimoz, G Cannarozzi, M Gil, D Margadant, A Roth, A Schneider, ...
RECOMB Workshop on Comparative Genomics, 61-72, 2005
922005
Who watches the watchmen? An appraisal of benchmarks for multiple sequence alignment
S Iantorno, K Gori, N Goldman, M Gil, C Dessimoz
Multiple sequence alignment methods, 59-73, 2014
612014
The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases
SIB Swiss Institute of Bioinformatics Members
Nucleic acids research 44 (D1), D27-D37, 2016
432016
Enabling semantic queries across federated bioinformatics databases
AC Sima, T Mendes de Farias, E Zbinden, M Anisimova, M Gil, ...
Database 2019, 2019
312019
Querying knowledge graphs in natural language
S Liang, K Stockinger, TM de Farias, M Anisimova, M Gil
Journal of big data 8 (1), 1-23, 2021
242021
Progressive multiple sequence alignment with indel evolution
M Maiolo, X Zhang, M Gil, M Anisimova
BMC bioinformatics 19 (1), 1-8, 2018
182018
Simple chained guide trees give poorer multiple sequence alignments than inferred trees in simulation and phylogenetic benchmarks
G Tan, M Gil, AP Löytynoja, N Goldman, C Dessimoz
Proceedings of the National Academy of Sciences 112 (2), E99-E100, 2015
182015
The cerebellum chip: an analog VLSI implementation of a cerebellar model of classical conditioning
C Hofstötter, M Gil, K Eng, G Indiveri, M Mintz, J Kramer, P Verschure
Advances in neural information processing systems 17, 2004
182004
Semantic integration and enrichment of heterogeneous biological databases
AC Sima, K Stockinger, TM Farias, M Gil
Evolutionary Genomics, 655-690, 2019
122019
Fast estimation of the difference between two PAM/JTT evolutionary distances in triplets of homologous sequences
C Dessimoz, M Gil, A Schneider, GH Gonnet
BMC bioinformatics 7 (1), 1-11, 2006
122006
Covariance of maximum likelihood evolutionary distances between sequences aligned pairwise
C Dessimoz, M Gil
BMC evolutionary biology 8 (1), 1-9, 2008
62008
A dimensionless fit measure for phylogenetic distance trees
M Gil, C Dessimoz, GH Gonnet
Journal of bioinformatics and computational biology 3 (06), 1429-1440, 2005
52005
Towards creating a new triple store for literature-based discovery
A Koroleva, M Anisimova, M Gil
Pacific-Asia Conference on Knowledge Discovery and Data Mining, 41-50, 2020
42020
A repetition test for pseudo-random number generators
M Gil, GH Gonnet, WP Petersen
Walter de Gruyter 12 (5), 385-393, 2006
42006
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Articles 1–20