Manuel Gil
Manuel Gil
Head of Biomedical String Analysis, ZHAW
Verified email at
Cited by
Cited by
Survey of branch support methods demonstrates accuracy, power, and robustness of fast likelihood-based approximation schemes
M Anisimova, M Gil, JF Dufayard, C Dessimoz, O Gascuel
Systematic biology 60 (5), 685-699, 2011
β-AMYLASE4, a Noncatalytic Protein Required for Starch Breakdown, Acts Upstream of Three Active β-Amylases in Arabidopsis Chloroplasts
DC Fulton, M Stettler, T Mettler, CK Vaughan, J Li, P Francisco, M Gil, ...
The Plant Cell 20 (4), 1040-1058, 2008
Current methods for automated filtering of multiple sequence alignments frequently worsen single-gene phylogenetic inference
G Tan, M Muffato, C Ledergerber, J Herrero, N Goldman, M Gil, ...
Systematic biology 64 (5), 778-791, 2015
Inferring hierarchical orthologous groups from orthologous gene pairs
AM Altenhoff, M Gil, GH Gonnet, C Dessimoz
PloS one 8 (1), e53786, 2013
Phylogenetic assessment of alignments reveals neglected tree signal in gaps
C Dessimoz, M Gil
Genome biology 11 (4), 1-9, 2010
CodonPhyML: fast maximum likelihood phylogeny estimation under codon substitution models
M Gil, MS Zanetti, S Zoller, M Anisimova
Molecular biology and evolution 30 (6), 1270-1280, 2013
OMA, a comprehensive, automated project for the identification of orthologs from complete genome data: introduction and first achievements
C Dessimoz, G Cannarozzi, M Gil, D Margadant, A Roth, A Schneider, ...
RECOMB Workshop on Comparative Genomics, 61-72, 2005
Who watches the watchmen? An appraisal of benchmarks for multiple sequence alignment
S Iantorno, K Gori, N Goldman, M Gil, C Dessimoz
Multiple sequence alignment methods, 59-73, 2014
The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases
SIB Swiss Institute of Bioinformatics Members
Nucleic acids research 44 (D1), D27-D37, 2016
Enabling semantic queries across federated bioinformatics databases
AC Sima, T Mendes de Farias, E Zbinden, M Anisimova, M Gil, ...
Database 2019, 2019
Querying knowledge graphs in natural language
S Liang, K Stockinger, TM de Farias, M Anisimova, M Gil
Journal of big data 8 (1), 1-23, 2021
Progressive multiple sequence alignment with indel evolution
M Maiolo, X Zhang, M Gil, M Anisimova
BMC bioinformatics 19 (1), 1-8, 2018
Simple chained guide trees give poorer multiple sequence alignments than inferred trees in simulation and phylogenetic benchmarks
G Tan, M Gil, AP Löytynoja, N Goldman, C Dessimoz
Proceedings of the National Academy of Sciences 112 (2), E99-E100, 2015
The cerebellum chip: an analog VLSI implementation of a cerebellar model of classical conditioning
C Hofstötter, M Gil, K Eng, G Indiveri, M Mintz, J Kramer, P Verschure
Advances in neural information processing systems 17, 2004
Semantic integration and enrichment of heterogeneous biological databases
AC Sima, K Stockinger, TM Farias, M Gil
Evolutionary Genomics, 655-690, 2019
Fast estimation of the difference between two PAM/JTT evolutionary distances in triplets of homologous sequences
C Dessimoz, M Gil, A Schneider, GH Gonnet
BMC bioinformatics 7 (1), 1-11, 2006
Covariance of maximum likelihood evolutionary distances between sequences aligned pairwise
C Dessimoz, M Gil
BMC evolutionary biology 8 (1), 1-9, 2008
A dimensionless fit measure for phylogenetic distance trees
M Gil, C Dessimoz, GH Gonnet
Journal of bioinformatics and computational biology 3 (06), 1429-1440, 2005
Towards creating a new triple store for literature-based discovery
A Koroleva, M Anisimova, M Gil
Pacific-Asia Conference on Knowledge Discovery and Data Mining, 41-50, 2020
A repetition test for pseudo-random number generators
M Gil, GH Gonnet, WP Petersen
Walter de Gruyter 12 (5), 385-393, 2006
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