Manuel Gil
Manuel Gil
Senior Researcher Lecturer at ZHAW
Verified email at zhaw.ch
Title
Cited by
Cited by
Year
Survey of branch support methods demonstrates accuracy, power, and robustness of fast likelihood-based approximation schemes
M Anisimova, M Gil, JF Dufayard, C Dessimoz, O Gascuel
Systematic biology 60 (5), 685-699, 2011
6422011
β-AMYLASE4, a Noncatalytic Protein Required for Starch Breakdown, Acts Upstream of Three Active β-Amylases in Arabidopsis Chloroplasts  
DC Fulton, M Stettler, T Mettler, CK Vaughan, J Li, P Francisco, M Gil, ...
The Plant Cell 20 (4), 1040-1058, 2008
2812008
Current methods for automated filtering of multiple sequence alignments frequently worsen single-gene phylogenetic inference
G Tan, M Muffato, C Ledergerber, J Herrero, N Goldman, M Gil, ...
Systematic biology 64 (5), 778-791, 2015
1462015
Inferring hierarchical orthologous groups from orthologous gene pairs
AM Altenhoff, M Gil, GH Gonnet, C Dessimoz
PloS one 8 (1), e53786, 2013
1432013
Phylogenetic assessment of alignments reveals neglected tree signal in gaps
C Dessimoz, M Gil
Genome biology 11 (4), 1-9, 2010
1112010
CodonPhyML: fast maximum likelihood phylogeny estimation under codon substitution models
M Gil, MS Zanetti, S Zoller, M Anisimova
Molecular biology and evolution 30 (6), 1270-1280, 2013
992013
OMA, a comprehensive, automated project for the identification of orthologs from complete genome data: introduction and first achievements
C Dessimoz, G Cannarozzi, M Gil, D Margadant, A Roth, A Schneider, ...
RECOMB Workshop on Comparative Genomics, 61-72, 2005
902005
Who watches the watchmen? An appraisal of benchmarks for multiple sequence alignment
S Iantorno, K Gori, N Goldman, M Gil, C Dessimoz
Multiple sequence alignment methods, 59-73, 2014
562014
The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases
SIB Swiss Institute of Bioinformatics Members
Nucleic acids research 44 (D1), D27-D37, 2016
282016
Enabling semantic queries across federated bioinformatics databases
AC Sima, T Mendes de Farias, E Zbinden, M Anisimova, M Gil, ...
Database 2019, 2019
192019
The cerebellum chip: an analog VLSI implementation of a cerebellar model of classical conditioning
C Hofstötter, M Gil, K Eng, G Indiveri, M Mintz, J Kramer, PF Verschure
Advances in neural information processing systems, 577-584, 2005
172005
Simple chained guide trees give poorer multiple sequence alignments than inferred trees in simulation and phylogenetic benchmarks
G Tan, M Gil, AP Löytynoja, N Goldman, C Dessimoz
Proceedings of the National Academy of Sciences 112 (2), E99-E100, 2015
152015
Fast estimation of the difference between two PAM/JTT evolutionary distances in triplets of homologous sequences
C Dessimoz, M Gil, A Schneider, GH Gonnet
BMC bioinformatics 7 (1), 1-11, 2006
122006
Progressive multiple sequence alignment with indel evolution
M Maiolo, X Zhang, M Gil, M Anisimova
BMC bioinformatics 19 (1), 1-8, 2018
102018
Semantic integration and enrichment of heterogeneous biological databases
AC Sima, K Stockinger, TM de Farias, M Gil
Evolutionary Genomics, 655-690, 2019
72019
Querying knowledge graphs in natural language
S Liang, K Stockinger, TM de Farias, M Anisimova, M Gil
Journal of big Data 8 (1), 1-23, 2021
62021
Covariance of maximum likelihood evolutionary distances between sequences aligned pairwise
C Dessimoz, M Gil
BMC evolutionary biology 8 (1), 1-9, 2008
62008
A dimensionless fit measure for phylogenetic distance trees
M Gil, C Dessimoz, GH Gonnet
Journal of bioinformatics and computational biology 3 (06), 1429-1440, 2005
52005
A repetition test for pseudo-random number generators
M Gil, GH Gonnet, WP Petersen
Walter de Gruyter 12 (5), 385-393, 2006
32006
Phylogenetic tree building methods
M Gil, GH Gonnet, RD Appel, E Feytmans
Bioinformatics: a swiss perspective, 329, 2009
22009
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Articles 1–20