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| Immuno-SABER enables highly multiplexed and amplified protein imaging in tissues SK Saka, Y Wang, JY Kishi, A Zhu, Y Zeng, W Xie, K Kirli, C Yapp, ... Nature biotechnology 37 (9), 1080-1090, 2019 | 311 | 2019 |
| SABER amplifies FISH: enhanced multiplexed imaging of RNA and DNA in cells and tissues JY Kishi, SW Lapan, BJ Beliveau, ER West, A Zhu, HM Sasaki, SK Saka, ... Nature methods 16 (6), 533-544, 2019 | 286 | 2019 |
| Walking along chromosomes with super-resolution imaging, contact maps, and integrative modeling G Nir, I Farabella, C Pérez Estrada, CG Ebeling, BJ Beliveau, HM Sasaki, ... PLoS genetics 14 (12), e1007872, 2018 | 234 | 2018 |
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| OligoMiner provides a rapid, flexible environment for the design of genome-scale oligonucleotide in situ hybridization probes BJ Beliveau, JY Kishi, G Nir, HM Sasaki, SK Saka, SC Nguyen, C Wu, ... Proceedings of the National Academy of Sciences 115 (10), E2183-E2192, 2018 | 181 | 2018 |
| Rapid in vitro production of single-stranded DNA D Minev, R Guerra, JY Kishi, C Smith, E Krieg, K Said, A Hornick, ... Nucleic acids research 47 (22), 11956-11962, 2019 | 36 | 2019 |
| Multiplexed signal amplification JY Kishi, B Beliveau, P Yin, Y Wang, SK Saka US Patent 11,492,661, 2022 | 34 | 2022 |
| Light-Seq: light-directed in situ barcoding of biomolecules in fixed cells and tissues for spatially indexed sequencing JY Kishi, N Liu, ER West, K Sheng, JJ Jordanides, M Serrata, CL Cepko, ... Nature Methods 19 (11), 1393-1402, 2022 | 32 | 2022 |
| Single-strand RPA for rapid and sensitive detection of SARS-CoV-2 RNA Y Kim, AB Yaseen, JY Kishi, F Hong, SK Saka, K Sheng, N Gopalkrishnan, ... MedRxiv, 2020 | 26 | 2020 |
| SABER enables highly multiplexed and amplified detection of DNA and RNA in cells and tissues JY Kishi, BJ Beliveau, SW Lapan, ER West, A Zhu, HM Sasaki, SK Saka, ... BioRxiv, 401810, 2018 | 15 | 2018 |
| Highly multiplexed in situ protein imaging with signal amplification by Immuno-SABER SK Saka, Y Wang, JY Kishi, A Zhu, Y Zeng, W Xie, K Kirli, C Yapp, ... Biorxiv, 507566, 2018 | 7 | 2018 |
| Quantitative multiplexed imaging of chromatin ultrastructure with Decode-PAINT HM Sasaki, JY Kishi, C Wu, BJ Beliveau, P Yin bioRxiv, 2022.08. 01.502089, 2022 | 5 | 2022 |
| Molecular programming tools JY Kishi, TE Schaus, P Yin, F Xuan, N Gopalkrishnan, WOO Sungwook US Patent 11,286,517, 2022 | 4 | 2022 |
| Rapid and scalable in vitro production of single-stranded DNA D Minev, R Guerra, JY Kishi, C Smith, E Krieg, K Said, A Hornick, ... BioRxiv, 558429, 2019 | 4 | 2019 |
| Methods and compositions for molecular authentication P Yin, JY Kishi, TE Schaus, Y Kim US Patent App. 17/040,041, 2021 | 3 | 2021 |
| Molecular verification systems JM Kim, JY Kishi, P Yin, SH Strassmann, TE Schaus US Patent 11,359,229, 2022 | 2 | 2022 |
| OligoMiner: A rapid, flexible environment for the design of genome-scale oligonucleotide in situ hybridization probes BJ Beliveau, JY Kishi, G Nir, HM Sasaki, SK Saka, SC Nguyen, C Wu, ... bioRxiv, 171504, 2017 | 2 | 2017 |
| Thermal-plex: fluidic-free, rapid sequential multiplexed imaging with DNA-encoded thermal channels F Hong, JY Kishi, RN Delgado, J Jeong, SK Saka, H Su, CL Cepko, P Yin Nature Methods 21 (2), 331-341, 2024 | 1 | 2024 |
