Piotr J Balwierz
Piotr J Balwierz
Postdoctoral Researcher, Imperial College London
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A promoter-level mammalian expression atlas
ARR Forrest, H Kawaji, M Rehli, JK Baillie, MJL De Hoon, V Haberle, ...
Nature 507 (7493), 462-470, 2014
Sox4 Is a Master Regulator of Epithelial-Mesenchymal Transition by Controlling Ezh2 Expression and Epigenetic Reprogramming
N Tiwari, VK Tiwari, L Waldmeier, PJ Balwierz, P Arnold, M Pachkov, ...
Cancer cell 23 (6), 768-783, 2013
The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line
H Suzuki, ARR Forrest, E Van Nimwegen, CO Daub, PJ Balwierz, ...
Nature genetics 41 (5), 553, 2009
Adipose tissue microRNAs as regulators of CCL2 production in human obesity
E Arner, N Mejhert, A KulytÚ, PJ Balwierz, M Pachkov, M Cormont, ...
Diabetes 61 (8), 1986-1993, 2012
The snoRNA MBII-52 (SNORD 115) is processed into smaller RNAs and regulates alternative splicing
S Kishore, A Khanna, Z Zhang, J Hui, PJ Balwierz, M Stefan, C Beach, ...
Human molecular genetics 19 (7), 1153-1164, 2010
ISMARA: automated modeling of genomic signals as a democracy of regulatory motifs
PJ Balwierz, M Pachkov, P Arnold, AJ Gruber, M Zavolan, ...
Genome research, 2014
Tyrosine phosphatase SHP2 promotes breast cancer progression and maintains tumor-initiating cells via activation of key transcription factors and a positive feedback signaling loop
N Aceto, N Sausgruber, H Brinkhaus, D Gaidatzis, G Martiny-Baron, ...
Nature medicine 18 (4), 529-537, 2012
Amphioxus functional genomics and the origins of vertebrate gene regulation
F MarlÚtaz, PN Firbas, I Maeso, JJ Tena, O Bogdanovic, M Perry, ...
Nature 564 (7734), 64, 2018
Transcription and enhancer profiling in human monocyte subsets
C Schmidl, K Renner, K Peter, R Eder, T Lassmann, PJ Balwierz, M Itoh, ...
Blood 123 (17), e90-e99, 2014
Methods for analyzing deep sequencing expression data: constructing the human and mouse promoterome with deepCAGE data
PJ Balwierz, P Carninci, CO Daub, J Kawai, Y Hayashizaki, W Van Belle, ...
Genome Biol 10 (7), R79, 2009
SwissRegulon, a database of genome-wide annotations of regulatory sites: recent updates
M Pachkov, PJ Balwierz, P Arnold, E Ozonov, E van Nimwegen
Nucleic Acids Research 41 (D1), D214-D220, 2013
Differential roles of epigenetic changes and Foxp3 expression in regulatory T cell-specific transcriptional regulation
H Morikawa, N Ohkura, A Vandenbon, M Itoh, S Nagao-Sato, H Kawaji, ...
Proceedings of the National Academy of Sciences 111 (14), 5289-5294, 2014
Modeling of epigenome dynamics identifies transcription factors that mediate Polycomb targeting
P Arnold, A Sch÷ler, M Pachkov, PJ Balwierz, H J°rgensen, MB Stadler, ...
Genome research 23 (1), 60-73, 2013
Parity induces differentiation and reduces Wnt/Notch signaling ratio and proliferation potential of basal stem/progenitor cells isolated from mouse mammary epithelium
F Meier-Abt, E Milani, T Roloff, H Brinkhaus, S Duss, DS Meyer, I Klebba, ...
Breast Cancer Research 15 (2), R36, 2013
Expression and processing of a small nucleolar RNA from the Epstein-Barr virus genome
R Hutzinger, R Feederle, J Mrazek, N Schiefermeier, PJ Balwierz, ...
PLoS pathogens 5 (8), 2009
The corepressor NCoR1 antagonizes PGC-1α and estrogen-related receptor α in the regulation of skeletal muscle function and oxidative metabolism
J PÚrez-Schindler, S Summermatter, S Salatino, F Zorzato, M Beer, ...
Molecular and cellular biology 32 (24), 4913-4924, 2012
The enhancer and promoter landscape of human regulatory and conventional T-cell subpopulations
C Schmidl, L Hansmann, T Lassmann, PJ Balwierz, H Kawaji, M Itoh, ...
Blood 123 (17), e68-e78, 2014
FANTOM4 EdgeExpressDB: an integrated database of promoters, genes, microRNAs, expression dynamics and regulatory interactions
J Severin, AM Waterhouse, H Kawaji, T Lassmann, E van Nimwegen, ...
Genome biology 10 (4), 1, 2009
Embryonic stem cell-specific microRNAs contribute to pluripotency by inhibiting regulators of multiple differentiation pathways
AJ Gruber, WA Grandy, PJ Balwierz, YA Dimitrova, M Pachkov, C Ciaudo, ...
Nucleic acids research 42 (14), 9313-9326, 2014
Dual-initiation promoters with intertwined canonical and TCT/TOP transcription start sites diversify transcript processing
C Nepal, Y Hadzhiev, P Balwierz, E Tarife˝o-Saldivia, R Cardenas, ...
Nature communications 11 (1), 168, 2020
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