| A promoter-level mammalian expression atlas ARR Forrest, H Kawaji, M Rehli, JK Baillie, MJL De Hoon, V Haberle, ... Nature 507 (7493), 462-470, 2014 | 1792* | 2014 |
| Sox4 Is a Master Regulator of Epithelial-Mesenchymal Transition by Controlling Ezh2 Expression and Epigenetic Reprogramming N Tiwari, VK Tiwari, L Waldmeier, PJ Balwierz, P Arnold, M Pachkov, ... Cancer cell 23 (6), 768-783, 2013 | 507 | 2013 |
| The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line H Suzuki, ARR Forrest, E Van Nimwegen, CO Daub, PJ Balwierz, ... Nature genetics 41 (5), 553, 2009 | 416 | 2009 |
| Adipose tissue microRNAs as regulators of CCL2 production in human obesity E Arner, N Mejhert, A Kulyté, PJ Balwierz, M Pachkov, M Cormont, ... Diabetes 61 (8), 1986-1993, 2012 | 346 | 2012 |
| ISMARA: automated modeling of genomic signals as a democracy of regulatory motifs PJ Balwierz, M Pachkov, P Arnold, AJ Gruber, M Zavolan, ... Genome research, 2014 | 332 | 2014 |
| The snoRNA MBII-52 (SNORD 115) is processed into smaller RNAs and regulates alternative splicing S Kishore, A Khanna, Z Zhang, J Hui, PJ Balwierz, M Stefan, C Beach, ... Human molecular genetics 19 (7), 1153-1164, 2010 | 325 | 2010 |
| Tyrosine phosphatase SHP2 promotes breast cancer progression and maintains tumor-initiating cells via activation of key transcription factors and a positive feedback signaling loop N Aceto, N Sausgruber, H Brinkhaus, D Gaidatzis, G Martiny-Baron, ... Nature medicine 18 (4), 529-537, 2012 | 313 | 2012 |
| Amphioxus functional genomics and the origins of vertebrate gene regulation F Marlétaz, PN Firbas, I Maeso, JJ Tena, O Bogdanovic, M Perry, ... Nature 564 (7734), 64, 2018 | 257 | 2018 |
| Transcription and enhancer profiling in human monocyte subsets C Schmidl, K Renner, K Peter, R Eder, T Lassmann, PJ Balwierz, M Itoh, ... Blood 123 (17), e90-e99, 2014 | 200 | 2014 |
| Methods for analyzing deep sequencing expression data: constructing the human and mouse promoterome with deepCAGE data PJ Balwierz, P Carninci, CO Daub, J Kawai, Y Hayashizaki, W Van Belle, ... Genome Biol 10 (7), R79, 2009 | 165 | 2009 |
| SwissRegulon, a database of genome-wide annotations of regulatory sites: recent updates M Pachkov, PJ Balwierz, P Arnold, E Ozonov, E van Nimwegen Nucleic Acids Research 41 (D1), D214-D220, 2013 | 161 | 2013 |
| Differential roles of epigenetic changes and Foxp3 expression in regulatory T cell-specific transcriptional regulation H Morikawa, N Ohkura, A Vandenbon, M Itoh, S Nagao-Sato, H Kawaji, ... Proceedings of the National Academy of Sciences 111 (14), 5289-5294, 2014 | 150 | 2014 |
| Modeling of epigenome dynamics identifies transcription factors that mediate Polycomb targeting P Arnold, A Schöler, M Pachkov, PJ Balwierz, H Jørgensen, MB Stadler, ... Genome research 23 (1), 60-73, 2013 | 140 | 2013 |
| Parity induces differentiation and reduces Wnt/Notch signaling ratio and proliferation potential of basal stem/progenitor cells isolated from mouse mammary epithelium F Meier-Abt, E Milani, T Roloff, H Brinkhaus, S Duss, DS Meyer, I Klebba, ... Breast Cancer Research 15 (2), R36, 2013 | 129 | 2013 |
| Expression and processing of a small nucleolar RNA from the Epstein-Barr virus genome R Hutzinger, R Feederle, J Mrazek, N Schiefermeier, PJ Balwierz, ... PLoS pathogens 5 (8), 2009 | 116 | 2009 |
| The corepressor NCoR1 antagonizes PGC-1α and estrogen-related receptor α in the regulation of skeletal muscle function and oxidative metabolism J Pérez-Schindler, S Summermatter, S Salatino, F Zorzato, M Beer, ... Molecular and cellular biology 32 (24), 4913-4924, 2012 | 101 | 2012 |
| The enhancer and promoter landscape of human regulatory and conventional T-cell subpopulations C Schmidl, L Hansmann, T Lassmann, PJ Balwierz, H Kawaji, M Itoh, ... Blood 123 (17), e68-e78, 2014 | 96 | 2014 |
| FANTOM4 EdgeExpressDB: an integrated database of promoters, genes, microRNAs, expression dynamics and regulatory interactions J Severin, AM Waterhouse, H Kawaji, T Lassmann, E van Nimwegen, ... Genome biology 10 (4), 1, 2009 | 70 | 2009 |
| Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements D Baranasic, M Hörtenhuber, PJ Balwierz, T Zehnder, AK Mukarram, ... Nature genetics 54 (7), 1037-1050, 2022 | 55 | 2022 |
| Embryonic stem cell-specific microRNAs contribute to pluripotency by inhibiting regulators of multiple differentiation pathways AJ Gruber, WA Grandy, PJ Balwierz, YA Dimitrova, M Pachkov, C Ciaudo, ... Nucleic acids research 42 (14), 9313-9326, 2014 | 49 | 2014 |
Erik van NimwegenProfessor of computational systems biology, Biozentrum, University of BaselVerified email at unibas.ch
