| Nipype KJ Gorgolewski, O Esteban, CJ Markiewicz, E Ziegler, DG Ellis, MP Notter, ... Software, 2018 | 174 | 2018 |
| DataLad: distributed system for joint management of code, data, and their relationship YO Halchenko, K Meyer, B Poldrack, DS Solanky, AS Wagner, J Gors, ... Journal of Open Source Software 6 (63), 3262, 2021 | 142 | 2021 |
| Brainhack: Developing a culture of open, inclusive, community-driven neuroscience R Gau, S Noble, K Heuer, KL Bottenhorn, IP Bilgin, YF Yang, ... Neuron 109 (11), 1769-1775, 2021 | 42 | 2021 |
| Whole-brain opto-fMRI map of mouse VTA dopaminergic activation reflects structural projections with small but significant deviations HI Ioanas, BJ Saab, M Rudin Translational Psychiatry 12 (1), 60, 2022 | 25* | 2022 |
| The past, present, and future of the brain imaging data structure (BIDS) RA Poldrack, CJ Markiewicz, S Appelhoff, YK Ashar, T Auer, S Baillet, ... Imaging Neuroscience 2, 1-19, 2024 | 23 | 2024 |
| An Optimized Registration Workflow and Standard Geometric Space for Small Animal Brain Imaging HI Ioanas, M Marks, V Zerbi, MF Yanik, M Rudin Neuroimage, 2021 | 20* | 2021 |
| An in vivo wound healing model for the characterization of the angiogenic process and its modulation by pharmacological interventions MK Schneider, HI Ioanas, J Xandry, M Rudin Scientific Reports 9 (1), 6004, 2019 | 16 | 2019 |
| Gentoo Linux for Neuroscience — a replicable, flexible, scalable, rolling-release environment that provides direct access to development software HI Ioanas, BJ Saab, M Rudin Research Ideas and Outcomes 3, e12095, 2017 | 16 | 2017 |
| HeuDiConv—flexible DICOM conversion into structured directory layouts YO Halchenko, M Goncalves, S Ghosh, P Velasco, ... Journal of open source software 9 (99), 5839, 2024 | 14 | 2024 |
| SAMRI—small animal magnetic resonance imaging HI Ioanas, M Marks, T Segessemann, D Schmidt, F Aymanns, M Rudin Genève: European Organization for Nuclear Research 10, 2019 | 11* | 2019 |
| Selective amotivation deficits following chronic psychosocial stress in mice AT Cabal, HI Ioanas, E Seifritz, BJ Saab Behavioural brain research 317, 424-433, 2017 | 10 | 2017 |
| An Automated Open-Source Workflow for Standards-Compliant Integration of Small Animal Magnetic Resonance Imaging Data HI Ioanas, M Marks, CM Garin, M Dhenain, MF Yanik, M Rudin | 9* | |
| Reproducible self-publishing for Python-based research HI Ioanas, M Rudin EuroSciPy, August, 2018 | 8 | 2018 |
| COSplay: Contrast optimized stimulation player F Aymanns, M Rudin, HI Ioanas Journal of Open Source Software 4 (39), 1171, 2019 | 7 | 2019 |
| Hybrid fiber optic-fMRI for multimodal cell-specific recording and manipulation of neural activity in rodents HI Ioanas, F Schlegel, Z Skachokova, A Schroeter, T Husak, M Rudin Neurophotonics 9 (3), 032206-032206, 2022 | 6 | 2022 |
| DataLad: distributed system for joint management of code, data, and their relationship. J Open Source Softw 6: 3262 Y Halchenko, K Meyer, B Poldrack, DS Solanky, AS Wagner, J Gors, ... | 5 | 2021 |
| Mouse Brain Atlases” generator workflows HI Ioanas, T Segessemann, M Rudin Zenodo or GitHub 10, 2019 | 5 | 2019 |
| LabbookDB: A Wet-Work-Tracking Database Application Framework. HI Ioanas, BJ Saab, M Rudin SciPy, 20-27, 2017 | 5 | 2017 |
| Whole-brain longitudinal profiling of serotonergic reuptake inhibition HI Ioanas, BJ Saab, M Rudin bioRxiv, 2020.08. 10.243899, 2020 | 3* | 2020 |
| Suitability of the new frontier task across mouse housing population sizes AT Cabal, HI Ioanas, E Seifritz, CR Pryce, BJ Saab J Matters 2, e201611000019, 2016 | 3 | 2016 |
Markus RudinProfessor for molecular imaging and Functional Pharmacology, University and ETH ZürichVerified email at biomed.ee.ethz.ch
