Hugo P. Bastos
Hugo P. Bastos
Post-Doc Research Associate, University of Cambridge
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Cited by
Cited by
Metrics for GO based protein semantic similarity: a systematic evaluation
C Pesquita, D Faria, H Bastos, AEN Ferreira, AO Falcão, FM Couto
BMC bioinformatics 9, 1-16, 2008
Evaluating GO-based semantic similarity measures
C Pesquita, D Faria, H Bastos, A Falcao, F Couto
Proc. 10th Annual Bio-Ontologies Meeting 37 (40), 38, 2007
Mining GO annotations for improving annotation consistency
D Faria, A Schlicker, C Pesquita, H Bastos, AEN Ferreira, M Albrecht, ...
PloS one 7 (7), e40519, 2012
Unique molecular and functional features of extramedullary hematopoietic stem and progenitor cell reservoirs in humans
N Mende, HP Bastos, A Santoro, KT Mahbubani, V Ciaurro, ...
Blood, The Journal of the American Society of Hematology 139 (23), 3387-3401, 2022
Chemical entity recognition and resolution to ChEBI
T Grego, C Pesquita, HP Bastos, FM Couto
International Scholarly Research Notices 2012 (1), 619427, 2012
STAT1 is essential for HSC function and maintains MHCIIhi stem cells that resist myeloablation and neoplastic expansion
J Li, MJ Williams, HJ Park, HP Bastos, X Wang, D Prins, NK Wilson, ...
Blood, The Journal of the American Society of Hematology 140 (14), 1592-1606, 2022
Application of gene ontology to gene identification
HP Bastos, B Tavares, C Pesquita, D Faria, FM Couto
In Silico Tools for Gene Discovery, 141-157, 2011
Hematopoietic stem cells retain functional potential and molecular identity in hibernation cultures
CA Oedekoven, M Belmonte, D Bode, FK Hamey, MS Shepherd, JLC Che, ...
Stem cell reports 16 (6), 1614-1628, 2021
The stem/progenitor landscape is reshaped in a mouse model of essential thrombocythemia and causes excess megakaryocyte production
D Prins, HJ Park, S Watcham, J Li, M Vacca, HP Bastos, A Gerbaulet, ...
Science advances 6 (48), eabd3139, 2020
Quantitative and molecular differences distinguish adult human medullary and extramedullary haematopoietic stem and progenitor cell landscapes
N Mende, HP Bastos, A Santoro, K Sham, KT Mahbubani, A Curd, ...
BioRxiv, 2020.01. 26.919753, 2020
Using GO terms to evaluate protein clustering
H Bastos, D Faria, C Pesquita, AO Falcão
The 10th Annual Bio-Ontologies Meeting, 1, 2007
Annotation extension through protein family annotation coherence metrics
HP Bastos, LA Clarke, FM Couto
Frontiers in genetics 4, 201, 2013
Chemical and metabolic pathway semantic similarity
T Grego, JD Ferreira, C Pesquita, H Bastos, D Vila Viçosa, J Freire, ...
Gryfun: A web application for go term annotation visualization and analysis in protein sets
HP Bastos, L Sousa, LA Clarke, FM Couto
PloS one 10 (3), e0119631, 2015
Arabidopsis sirtuins and poly (ADP‐ribose) polymerases regulate gene expression in the day but do not affect circadian rhythms
JH Kim, LJ Bell, X Wang, R Wimalasekera, HP Bastos, KA Kelly, ...
Plant, Cell & Environment 44 (5), 1451-1467, 2021
Identifying bioentity recognition errors of rule-based text-mining systems
FM Couto, T Grego, HP Bastos, C Pesquita, R Torres, P Sánchez, ...
2008 Third International Conference on Digital Information Management, 733-738, 2008
Functional coherence metrics in protein families
HP Bastos, L Sousa, LA Clarke, FM Couto
Journal of Biomedical Semantics 7, 1-11, 2016
The Biomedical Ontology Applications (BOA) framework
B Tavares, HP Bastos, D Faria, JD Ferreira, T Grego, C Pesquita, ...
Maintenance of haematopoietic stem cells by JAK inhibition and increased tyrosine-unphosphorylated STAT5
J williams, X Wang, G Grondys-Katarba, HP Bastos, M Wantoch, J Park, ...
bioRxiv, 2024.05. 29.596460, 2024
Preleukemic single-cell landscapes reveal mutation-specific mechanisms and gene programs predictive of AML patient outcomes
T Isobe, I Kucinski, M Barile, X Wang, R Hannah, HP Bastos, S Chabra, ...
Cell Genomics 3 (12), 2023
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Articles 1–20