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Hugo P. Bastos
Hugo P. Bastos
Post-Doc Research Associate, University of Cambridge
Verified email at cam.ac.uk
Title
Cited by
Cited by
Year
Metrics for GO based protein semantic similarity: a systematic evaluation
C Pesquita, D Faria, H Bastos, AEN Ferreira, AO Falcão, FM Couto
BMC bioinformatics 9, 1-16, 2008
4272008
Evaluating GO-based semantic similarity measures
C Pesquita, D Faria, H Bastos, A Falcao, F Couto
Proc. 10th Annual Bio-Ontologies Meeting 37 (40), 38, 2007
1522007
Mining GO annotations for improving annotation consistency
D Faria, A Schlicker, C Pesquita, H Bastos, AEN Ferreira, M Albrecht, ...
PloS one 7 (7), e40519, 2012
512012
Unique molecular and functional features of extramedullary hematopoietic stem and progenitor cell reservoirs in humans
N Mende, HP Bastos, A Santoro, KT Mahbubani, V Ciaurro, ...
Blood, The Journal of the American Society of Hematology 139 (23), 3387-3401, 2022
342022
Chemical entity recognition and resolution to ChEBI
T Grego, C Pesquita, HP Bastos, FM Couto
International Scholarly Research Notices 2012 (1), 619427, 2012
302012
STAT1 is essential for HSC function and maintains MHCIIhi stem cells that resist myeloablation and neoplastic expansion
J Li, MJ Williams, HJ Park, HP Bastos, X Wang, D Prins, NK Wilson, ...
Blood, The Journal of the American Society of Hematology 140 (14), 1592-1606, 2022
212022
Application of gene ontology to gene identification
HP Bastos, B Tavares, C Pesquita, D Faria, FM Couto
In Silico Tools for Gene Discovery, 141-157, 2011
202011
Hematopoietic stem cells retain functional potential and molecular identity in hibernation cultures
CA Oedekoven, M Belmonte, D Bode, FK Hamey, MS Shepherd, JLC Che, ...
Stem cell reports 16 (6), 1614-1628, 2021
172021
The stem/progenitor landscape is reshaped in a mouse model of essential thrombocythemia and causes excess megakaryocyte production
D Prins, HJ Park, S Watcham, J Li, M Vacca, HP Bastos, A Gerbaulet, ...
Science advances 6 (48), eabd3139, 2020
162020
Quantitative and molecular differences distinguish adult human medullary and extramedullary haematopoietic stem and progenitor cell landscapes
N Mende, HP Bastos, A Santoro, K Sham, KT Mahbubani, A Curd, ...
BioRxiv, 2020.01. 26.919753, 2020
152020
Using GO terms to evaluate protein clustering
H Bastos, D Faria, C Pesquita, AO Falcão
The 10th Annual Bio-Ontologies Meeting, 1, 2007
102007
Annotation extension through protein family annotation coherence metrics
HP Bastos, LA Clarke, FM Couto
Frontiers in genetics 4, 201, 2013
82013
Chemical and metabolic pathway semantic similarity
T Grego, JD Ferreira, C Pesquita, H Bastos, D Vila Viçosa, J Freire, ...
82010
Gryfun: A web application for go term annotation visualization and analysis in protein sets
HP Bastos, L Sousa, LA Clarke, FM Couto
PloS one 10 (3), e0119631, 2015
72015
Arabidopsis sirtuins and poly (ADP‐ribose) polymerases regulate gene expression in the day but do not affect circadian rhythms
JH Kim, LJ Bell, X Wang, R Wimalasekera, HP Bastos, KA Kelly, ...
Plant, Cell & Environment 44 (5), 1451-1467, 2021
42021
Identifying bioentity recognition errors of rule-based text-mining systems
FM Couto, T Grego, HP Bastos, C Pesquita, R Torres, P Sánchez, ...
2008 Third International Conference on Digital Information Management, 733-738, 2008
42008
Functional coherence metrics in protein families
HP Bastos, L Sousa, LA Clarke, FM Couto
Journal of Biomedical Semantics 7, 1-11, 2016
32016
The Biomedical Ontology Applications (BOA) framework
B Tavares, HP Bastos, D Faria, JD Ferreira, T Grego, C Pesquita, ...
22011
Maintenance of haematopoietic stem cells by JAK inhibition and increased tyrosine-unphosphorylated STAT5
J williams, X Wang, G Grondys-Katarba, HP Bastos, M Wantoch, J Park, ...
bioRxiv, 2024.05. 29.596460, 2024
2024
Preleukemic single-cell landscapes reveal mutation-specific mechanisms and gene programs predictive of AML patient outcomes
T Isobe, I Kucinski, M Barile, X Wang, R Hannah, HP Bastos, S Chabra, ...
Cell Genomics 3 (12), 2023
2023
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Articles 1–20