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Zhengqing Ouyang
Zhengqing Ouyang
Associate Professor, Department of Biostatistics and Epidemiology, University of Massachusetts
Verified email at schoolph.umass.edu - Homepage
Title
Cited by
Cited by
Year
An integrated encyclopedia of DNA elements in the human genome
ENCODE
Nature 489, 57-74, 2012
16572*2012
Architecture of the human regulatory network derived from ENCODE data
MB Gerstein, A Kundaje, M Hariharan, SG Landt, KK Yan, C Cheng, ...
Nature 489 (7414), 91-100, 2012
16422012
Landscape and variation of RNA secondary structure across the human transcriptome
Y Wan, K Qu, QC Zhang, RA Flynn, O Manor, Z Ouyang, J Zhang, ...
Nature 505 (7485), 706-709, 2014
5752014
Multiplexed detection of proteins, transcriptomes, clonotypes and CRISPR perturbations in single cells
EP Mimitou, A Cheng, A Montalbano, S Hao, M Stoeckius, M Legut, ...
Nature methods, 1, 2019
4042019
ChIP-Seq of transcription factors predicts absolute and differential gene expression in embryonic stem cells
Z Ouyang, Q Zhou, WH Wong
Proceedings of the National Academy of Sciences 106 (51), 21521-21526, 2009
3982009
Genome-wide Measurement of RNA Folding Energies
Y Wan, K Qu, Z Ouyang, M Kertesz, J Li, R Tibshirani, DL Makino, ...
Molecular Cell, 2012
2182012
Exon arrays provide accurate assessments of gene expression
K Kapur, Y Xing, Z Ouyang, WH Wong
Genome Biol 8 (5), R82, 2007
1562007
Hedgehog pathway-regulated gene networks in cerebellum development and tumorigenesis
EY Lee, H Ji, Z Ouyang, B Zhou, W Ma, SA Vokes, AP McMahon, ...
Proceedings of the National Academy of Sciences 107 (21), 9736-9741, 2010
1382010
SeqFold: Genome-scale reconstruction of RNA secondary structure integrating high-throughput sequencing data
Z Ouyang, MP Snyder, HY Chang
Genome Research 23 (2), 377-387, 2013
1312013
Single cell transcriptomics based-MacSpectrum reveals novel macrophage activation signatures in diseases
C Li, A Menoret, C Farragher, Z Ouyang, C Bonin, P Holvoet, AT Vella, ...
JCI insight, 2019
1062019
Genome-wide mapping of RNA structure using nuclease digestion and high-throughput sequencing
Y Wan, K Qu, Z Ouyang, HY Chang
Nature Protocols 8 (5), 849-869, 2013
1032013
Genome-wide DNA methylation profiling reveals cancer-associated changes within early colonic neoplasia
RDW Hanley MP, Hahn MA, Li AX, Wu X, Lin J, Wang J, Choi AH, Ouyang Z, Fong ...
Oncogene, 2017
832017
HSA: integrating multi-track Hi-C data for genome-scale reconstruction of 3D chromatin structure
C Zou, Y Zhang, Z Ouyang
Genome biology 17 (1), 1, 2016
742016
Accuracy improvement for identifying translation initiation sites in microbial genomes
HQ Zhu, GQ Hu, ZQ Ouyang, J Wang, ZS She
Bioinformatics 20 (18), 3308-3317, 2004
702004
Assessing the conservation of mammalian gene expression using high-density exon arrays
Y Xing, Z Ouyang, K Kapur, MP Scott, WH Wong
Molecular biology and evolution 24 (6), 1283-1285, 2007
672007
Correlation of Global MicroRNA Expression With Basal Cell Carcinoma Subtype
C Heffelfinger, Z Ouyang, A Engberg, DJ Leffell, AM Hanlon, PB Gordon, ...
G3: Genes| Genomes| Genetics 2 (2), 279-286, 2012
582012
DNA methylomes of bovine gametes and in vivo produced preimplantation embryos
Z Jiang, J Lin, H Dong, X Zheng, SL Marjani, J Duan, Z Ouyang, J Chen, ...
Biology of reproduction, 2018
572018
Multimodal single-cell analysis of cutaneous T cell lymphoma reveals distinct sub-clonal tissue-dependent signatures
A Herrera, A Cheng, EP Mimitou, A Seffens, D George, M Bar-Natan, ...
Blood, 2021
442021
STAT3 Targets Suggest Mechanisms of Aggressive Tumorigenesis in Diffuse Large B-Cell Lymphoma
J Hardee, Z Ouyang, Y Zhang, A Kundaje, P Lacroute, M Snyder
G3: Genes| Genomes| Genetics 3 (12), 2173-2185, 2013
412013
c-MYC regulates mRNA translation efficiency and start-site selection in lymphoma
K Singh, J Lin, Y Zhong, A Burčul, P Mohan, M Jiang, L Sun, ...
Journal of Experimental Medicine, jem. 20181726, 2019
402019
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